Procedure followed:
- Reference human genome sequence (build37, version 2) is processed.
- Sequence repeat elements are mapped according to NCBI's masking data.
- Gene coordinates and annotations are taken from NCBI's gbk files.
- Unresolved segments are removed, 2.85 billion bases in 289 continuous scaffolds are analyzed.
- Restriction enzyme sites are located, distances between consecutive sites ("fragment lengths") are tabulated.
- Mean and standard deviation of distances, average number of sites per megabase
of sequence are calculated.
- Distribution of site distances plotted for the 1-350 bp range with base resolution (click "details").
- Distribution of distances binnned with standard_deviation/50 resolution plotted (click "details").
- Peaks in these distributons (exceptionally frequent fragment lengths) are identified, and
associated with repeat elements.
- Longest uncut segments are listed for each specificity.
- Repeat content and gene content of longest uncut segments are tabulated.
Enzyme | Specificity | Sites per megabase |
Distance mean, standard deviation (in bases) |
Distributions | |
---|---|---|---|---|---|
AclI | AACGTT | 56.7 | 17647 (18473) | ![]() |
details |
LlaCI | AAGCTT | 292.6 | 3417 (3640) | ![]() |
details |
Mae7806I | AAGGAG | 803.3 | 1244 (1373) | ![]() |
details |
SspI | AATATT | 819.7 | 1219 (1781) | ![]() |
details |
Tsp509I | AATT | 7498.7 | 133 (181) | ![]() |
details |
RlaII | ACACAG | 859.5 | 1163 (1251) | ![]() |
details |
PciI | ACATGT | 369.9 | 2703 (3084) | ![]() |
details |
AgeI | ACCGGT | 18.4 | 54298 (59099) | ![]() |
details |
BspMI | ACCTGC | 477.4 | 2094 (2374) | ![]() |
details |
SexAI | ACCWGGT | 103.1 | 9696 (10446) | ![]() |
details |
MluI | ACGCGT | 7.3 | 137031 (192274) | ![]() |
details |
TspGWI | ACGGA | 347.4 | 2878 (3333) | ![]() |
details |
BceSIII | ACGGC | 242.1 | 4129 (5672) | ![]() |
details |
MaeII | ACGT | 751.7 | 1330 (1440) | ![]() |
details |
HpyCH4III | ACNGT | 2634.7 | 379 (392) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
BaeI | ACNNNNGTAYC | 91.1 | 10977 (11478) | ![]() |
details |
BsaXI | ACNNNNNCTCC | 459.0 | 2178 (2468) | ![]() |
details |
AflIII | ACRYGT | 512.7 | 1950 (2206) | ![]() |
details |
SpeI | ACTAGT | 137.4 | 7277 (8275) | ![]() |
details |
BsrI | ACTGG | 1985.0 | 503 (543) | ![]() |
details |
BmrI | ACTGGG | 589.4 | 1696 (1898) | ![]() |
details |
BglII | AGATCT | 269.3 | 3713 (3890) | ![]() |
details |
AfeI | AGCGCT | 37.7 | 26506 (34587) | ![]() |
details |
AluI | AGCT | 4477.1 | 223 (236) | ![]() |
details |
StuI | AGGCCT | 279.7 | 3575 (4249) | ![]() |
details |
ScaI | AGTACT | 188.5 | 5304 (5918) | ![]() |
details |
ApyPI | ATCGAC | 33.2 | 30110 (31599) | ![]() |
details |
ClaI | ATCGAT | 29.7 | 33626 (35270) | ![]() |
details |
TspDTI | ATGAA | 3622.6 | 276 (337) | ![]() |
details |
NsiI | ATGCAT | 322.3 | 3102 (3580) | ![]() |
details |
AseI | ATTAAT | 508.6 | 1966 (2711) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
SwaI | ATTTAAAT | 78.8 | 12686 (16793) | ![]() |
details |
OgrI | CAACNAC | 362.7 | 2756 (3162) | ![]() |
details |
DraRI | CAAGNAC | 436.9 | 2289 (2385) | ![]() |
details |
NhaXI | CAAGRAG | 373.2 | 2679 (2824) | ![]() |
details |
CspCI | CAANNNNNGTGG | 150.1 | 6662 (6799) | ![]() |
details |
TthHB27I | CAARCA | 1590.7 | 628 (674) | ![]() |
details |
MunI | CAATTG | 191.1 | 5232 (5927) | ![]() |
details |
BssSI | CACGAG | 135.5 | 7382 (8789) | ![]() |
details |
BmgBIB | CACGTC | 94.1 | 10629 (12997) | ![]() |
details |
DraIII | CACNNNGTG | 193.5 | 5168 (5767) | ![]() |
details |
AleI | CACNNNNGTG | 186.7 | 5355 (6183) | ![]() |
details |
TstI | CACNNNNNNTCC | 570.5 | 1752 (1985) | ![]() |
details |
CcoMI | CAGCAG | 815.1 | 1226 (1561) | ![]() |
details |
SbaI | CAGCTG | 375.4 | 2664 (3230) | ![]() |
details |
AlwNI | CAGNNNCTG | 486.4 | 2055 (2447) | ![]() |
details |
SdeAI | CAGRAG | 2271.7 | 440 (521) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
TspRI | CASTG | 3029.4 | 330 (361) | ![]() |
details |
NdeI | CATATG | 313.5 | 3189 (3866) | ![]() |
details |
NlaCI | CATCAC | 549.4 | 1820 (1944) | ![]() |
details |
PlaDI | CATCAG | 576.0 | 1736 (1847) | ![]() |
details |
RceI | CATCGAC | 10.2 | 98348 (106383) | ![]() |
details |
NlaIII | CATG | 4785.6 | 208 (224) | ![]() |
details |
DrdV | CATGNAC | 513.0 | 1949 (2210) | ![]() |
details |
MslI | CAYNNNNRTG | 1130.0 | 884 (949) | ![]() |
details |
BspNCI | CCAGA | 2499.4 | 400 (446) | ![]() |
details |
CjeI | CCANNNNNNGT | 1799.1 | 555 (600) | ![]() |
details |
XcmI | CCANNNNNNNNNTGG | 285.3 | 3504 (4010) | ![]() |
details |
BstXI | CCANNNNNNTGG | 630.8 | 1585 (1952) | ![]() |
details |
PflMI | CCANNNNNTGG | 340.6 | 2936 (3306) | ![]() |
details |
McaCI | CCATC | 2130.2 | 469 (526) | ![]() |
details |
NcoI | CCATGG | 262.6 | 3807 (4230) | ![]() |
details |
CchIII | CCCAAG | 622.0 | 1607 (1836) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
BseYIB | CCCAGC | 1282.9 | 779 (1212) | ![]() |
details |
FauI | CCCGC | 493.5 | 2026 (3707) | ![]() |
details |
RpaBI | CCCGCAG | 32.3 | 30961 (55857) | ![]() |
details |
XmaI | CCCGGG | 130.9 | 7637 (12676) | ![]() |
details |
BscGI | CCCGT | 374.6 | 2669 (3657) | ![]() |
details |
AciI | CCGC | 1436.2 | 696 (1292) | ![]() |
details |
SenpCI | CCGCGG | 22.8 | 43860 (107870) | ![]() |
details |
BsrBI | CCGCTC | 79.8 | 12526 (19735) | ![]() |
details |
MspI | CCGG | 802.7 | 1245 (2198) | ![]() |
details |
StyD4I | CCNGG | 4102.8 | 243 (390) | ![]() |
details |
Hpy99IV | CCNNGG | 3564.0 | 280 (421) | ![]() |
details |
BslIB | CCNNNNNNNGG | 2619.4 | 381 (551) | ![]() |
details |
BtgI | CCRYGG | 405.0 | 2469 (3051) | ![]() |
details |
NciI | CCSGG | 677.0 | 1477 (3121) | ![]() |
details |
AvrII | CCTAGG | 206.5 | 4842 (5176) | ![]() |
details |
MnlI | CCTC | 9514.9 | 105 (141) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
BbvCIB | CCTCAGC | 485.7 | 2058 (2797) | ![]() |
details |
SdaI | CCTGCAGG | 26.9 | 37190 (53243) | ![]() |
details |
Bpu10IB | CCTNAGC | 834.6 | 1198 (1496) | ![]() |
details |
Bsu36I | CCTNAGG | 328.0 | 3048 (3496) | ![]() |
details |
EcoNI | CCTNNNNNAGG | 268.5 | 3723 (4408) | ![]() |
details |
HpyAV | CCTTC | 2403.1 | 416 (499) | ![]() |
details |
PspGI | CCWGG | 3425.7 | 291 (431) | ![]() |
details |
StyI | CCWWGG | 1079.6 | 926 (1055) | ![]() |
details |
PspPRI | CCYCAG | 1822.8 | 548 (719) | ![]() |
details |
SstE37I | CGAAGAC | 15.1 | 66159 (70539) | ![]() |
details |
BcgI | CGANNNNNNTGC | 111.9 | 8933 (11966) | ![]() |
details |
XorKI | CGATCG | 4.2 | 235598 (295546) | ![]() |
details |
PspOMII | CGCCCAR | 140.4 | 7124 (11163) | ![]() |
details |
PliMI | CGCCGAC | 4.2 | 238009 (432664) | ![]() |
details |
TmaI | CGCG | 253.5 | 3944 (8713) | ![]() |
details |
GauT27I | CGCGCAGG | 3.0 | 338220 (587467) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
EagI | CGGCCG | 31.0 | 32223 (67311) | ![]() |
details |
RsrII | CGGWCCG | 3.3 | 304917 (506969) | ![]() |
details |
RpaB5I | CGRGGAC | 42.3 | 23637 (37962) | ![]() |
details |
BsiEI | CGRYCG | 47.1 | 21208 (41607) | ![]() |
details |
BsiWI | CGTACG | 4.0 | 252613 (300468) | ![]() |
details |
Esp3I | CGTCTC | 224.1 | 4462 (6371) | ![]() |
details |
Hpy99I | CGWCG | 53.9 | 18542 (30957) | ![]() |
details |
MspA1I | CMGCKG | 502.3 | 1990 (2663) | ![]() |
details |
SgrAI | CRCCGGYG | 5.2 | 192930 (297350) | ![]() |
details |
MaqI | CRTTGAC | 96.8 | 10331 (10900) | ![]() |
details |
MthZI | CTAG | 2716.1 | 368 (389) | ![]() |
details |
BspCNI | CTCAG | 3282.8 | 304 (357) | ![]() |
details |
XhoI | CTCGAG | 41.9 | 23844 (28573) | ![]() |
details |
TdeII | CTCTTC | 789.5 | 1266 (1391) | ![]() |
details |
Eco57I | CTGAAG | 749.7 | 1333 (1412) | ![]() |
details |
XveI | CTGCAG | 452.8 | 2208 (2696) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
BpmI | CTGGAG | 1011.4 | 988 (1140) | ![]() |
details |
HpyHI | CTNAG | 4843.9 | 206 (222) | ![]() |
details |
LlaGI | CTNGAYG | 433.6 | 2306 (2395) | ![]() |
details |
SfeI | CTRYAG | 1209.3 | 826 (864) | ![]() |
details |
AflII | CTTAAG | 223.9 | 4466 (4755) | ![]() |
details |
BpuEI | CTTGAG | 678.0 | 1474 (1599) | ![]() |
details |
SmlI | CTYRAG | 944.0 | 1059 (1112) | ![]() |
details |
RpaB53I | CWTCCAG | 381.6 | 2620 (2846) | ![]() |
details |
NspIII | CYCGRG | 349.1 | 2864 (4569) | ![]() |
details |
PpiI | GAACNNNNNCTC | 86.3 | 11582 (12233) | ![]() |
details |
AloI | GAACNNNNNNTCC | 85.0 | 11771 (12424) | ![]() |
details |
NcuI | GAAGA | 3071.0 | 325 (371) | ![]() |
details |
XmnI | GAANNNNTTC | 346.6 | 2884 (3093) | ![]() |
details |
Mva1269I | GAATGC | 428.7 | 2332 (2479) | ![]() |
details |
Van91II | GAATTC | 272.1 | 3674 (3884) | ![]() |
details |
EsaSSI | GACCAC | 309.3 | 3232 (3570) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
TaqII | GACCGA | 44.9 | 22253 (26740) | ![]() |
details |
NmeBI | GACGC | 195.9 | 5104 (7510) | ![]() |
details |
ZraI | GACGTC | 24.4 | 41041 (50398) | ![]() |
details |
Tth111I | GACNNNGTC | 245.7 | 4069 (5193) | ![]() |
details |
PshAI | GACNNNNGTC | 93.6 | 10678 (11530) | ![]() |
details |
AhdI | GACNNNNNGTC | 94.9 | 10542 (11087) | ![]() |
details |
NgoAVIII | GACNNNNNTGA | 431.0 | 2319 (2390) | ![]() |
details |
SdeOSI | GACNNNNRTGA | 197.0 | 5075 (5131) | ![]() |
details |
R2.BspD6I | GACTC | 1359.0 | 735 (799) | ![]() |
details |
SacI | GAGCTC | 208.0 | 4807 (5456) | ![]() |
details |
MchCM4I | GAGGAG | 750.4 | 1332 (1797) | ![]() |
details |
CjeNII | GAGNNNNNGT | 2187.8 | 457 (541) | ![]() |
details |
PleI | GAGTC | 1359.0 | 735 (799) | ![]() |
details |
HpyAIV | GANTC | 2999.2 | 333 (343) | ![]() |
details |
- | GASTC | 1359.0 | 735 (799) | ![]() |
details |
EcoRV | GATATC | 150.5 | 6644 (7674) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
Sth368I | GATC | 2490.9 | 401 (419) | ![]() |
details |
MamI | GATNNNNATC | 155.4 | 6436 (6799) | ![]() |
details |
TfiI | GAWTC | 1640.1 | 609 (635) | ![]() |
details |
HaeIV | GAYNNNNNRTC | 476.6 | 2098 (2175) | ![]() |
details |
R2.BsrDI | GCAATG | 494.1 | 2023 (2077) | ![]() |
details |
Lsp1109I | GCAGC | 1816.9 | 550 (745) | ![]() |
details |
BtsIB | GCAGTG | 1028.7 | 972 (1246) | ![]() |
details |
BstAPI | GCANNNNNTGC | 284.8 | 3511 (3769) | ![]() |
details |
SfaNI | GCATC | 1258.3 | 794 (870) | ![]() |
details |
SphI | GCATGC | 190.7 | 5244 (5663) | ![]() |
details |
NmeAIII | GCCGAG | 272.6 | 3668 (5946) | ![]() |
details |
AspCNI | GCCGC | 313.6 | 3188 (6458) | ![]() |
details |
NgoMIV | GCCGGC | 43.4 | 23039 (44459) | ![]() |
details |
RspRSI | GCCNNNNNGGC | 183.2 | 5459 (7941) | ![]() |
details |
AsiSI | GCGATCGC | 0.4 | 2676658 (2805325) | ![]() |
details |
BtgZI | GCGATG | 62.2 | 16074 (19118) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
Hpy99III | GCGC | 578.6 | 1728 (3147) | ![]() |
details |
McaTI | GCGCGC | 25.1 | 39882 (94447) | ![]() |
details |
CdpI | GCGGAG | 161.4 | 6197 (9382) | ![]() |
details |
NotI | GCGGCCGC | 3.3 | 302116 (600864) | ![]() |
details |
SpoDI | GCGGRAG | 70.6 | 14154 (21809) | ![]() |
details |
LlaDII | GCNGC | 2130.6 | 469 (681) | ![]() |
details |
Cac8I | GCNNGC | 1887.9 | 529 (719) | ![]() |
details |
MwoI | GCNNNNNNNGC | 2131.2 | 469 (642) | ![]() |
details |
NgoFVII | GCSGC | 313.6 | 3188 (6458) | ![]() |
details |
NheI | GCTAGC | 98.2 | 10180 (11291) | ![]() |
details |
AmaCSI | GCTCCA | 471.2 | 2122 (2546) | ![]() |
details |
SapI | GCTCTTC | 130.5 | 7664 (8282) | ![]() |
details |
BlpI | GCTNAGC | 183.2 | 5459 (6564) | ![]() |
details |
TseI | GCWGC | 1816.9 | 550 (745) | ![]() |
details |
Bsp1286I | GDGCHC | 1678.4 | 595 (780) | ![]() |
details |
CchII | GGARGA | 1724.9 | 579 (687) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
EacI | GGATC | 1171.4 | 853 (991) | ![]() |
details |
OkrAI | GGATCC | 126.1 | 7927 (8692) | ![]() |
details |
StsI | GGATG | 1792.0 | 558 (625) | ![]() |
details |
SuaI | GGCC | 2918.3 | 342 (478) | ![]() |
details |
HauI | GGCCAAG | 208.8 | 4788 (6098) | ![]() |
details |
FseI | GGCCGGCC | 4.6 | 215446 (390072) | ![]() |
details |
SfiI | GGCCNNNNNGGCC | 16.3 | 61440 (99839) | ![]() |
details |
SfoI | GGCGCC | 80.0 | 12499 (19651) | ![]() |
details |
AscI | GGCGCGCC | 1.6 | 640695 (1072205) | ![]() |
details |
EciI | GGCGGA | 198.1 | 5047 (8085) | ![]() |
details |
BloAORF92P | GGCGGC | 121.5 | 8231 (18398) | ![]() |
details |
BspLU11III | GGGAC | 1328.7 | 752 (925) | ![]() |
details |
PspOMI | GGGCCC | 159.8 | 6257 (10138) | ![]() |
details |
AteTI | GGGRAG | 1416.8 | 705 (958) | ![]() |
details |
R2.BssIMI | GGGTC | 1094.0 | 914 (1168) | ![]() |
details |
TdeIII | GGNCC | 2198.6 | 454 (700) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
NlaIV | GGNNCC | 2466.6 | 405 (604) | ![]() |
details |
KpnI | GGTACC | 100.1 | 9992 (10869) | ![]() |
details |
Eco31I | GGTCTC | 576.0 | 1736 (2130) | ![]() |
details |
NgoBVIII | GGTGA | 2060.4 | 485 (530) | ![]() |
details |
BstEII | GGTNACC | 116.7 | 8568 (9416) | ![]() |
details |
SinI | GGWCC | 932.9 | 1071 (1381) | ![]() |
details |
HgiCI | GGYRCC | 539.1 | 1854 (2280) | ![]() |
details |
Bme1580I | GKGCMC | 692.2 | 1444 (1899) | ![]() |
details |
HgiGI | GRCGYC | 159.9 | 6254 (9605) | ![]() |
details |
EcoT38I | GRGCYC | 814.4 | 1227 (1701) | ![]() |
details |
RpaTI | GRTGGAG | 465.5 | 2148 (2589) | ![]() |
details |
RsaI | GTAC | 1763.8 | 566 (606) | ![]() |
details |
BstZ17I | GTATAC | 148.3 | 6743 (8247) | ![]() |
details |
BciVI | GTATCC | 239.4 | 4177 (4407) | ![]() |
details |
XamI | GTCGAC | 10.7 | 93276 (101295) | ![]() |
details |
BsmAI | GTCTC | 2295.8 | 435 (534) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
ApaLI | GTGCAC | 171.4 | 5833 (6348) | ![]() |
details |
BsgI | GTGCAG | 712.4 | 1403 (1600) | ![]() |
details |
AccI | GTMKAC | 376.3 | 2657 (2820) | ![]() |
details |
MjaIV | GTNNAC | 2166.8 | 461 (478) | ![]() |
details |
Tsp45I | GTSAC | 1376.8 | 726 (804) | ![]() |
details |
HpaI | GTTAAC | 135.3 | 7389 (8047) | ![]() |
details |
PmeI | GTTTAAAC | 14.3 | 69773 (75434) | ![]() |
details |
HindII | GTYRAC | 383.4 | 2608 (2748) | ![]() |
details |
BsiHKAI | GWGCWC | 711.1 | 1406 (1600) | ![]() |
details |
ApoI | RAATTY | 2174.0 | 459 (592) | ![]() |
details |
NspI | RCATGY | 1074.5 | 930 (1020) | ![]() |
details |
NmeDI | RCCGGY | 113.8 | 8789 (13646) | ![]() |
details |
XhoII | RGATCY | 748.2 | 1336 (1393) | ![]() |
details |
NgoBI | RGCGCY | 192.0 | 5209 (8358) | ![]() |
details |
CviKI-1 | RGCY | 15480.8 | 64 (81) | ![]() |
details |
EcoO109I | RGGNCCY | 811.1 | 1232 (1879) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
PpuMI | RGGWCCY | 376.9 | 2653 (3462) | ![]() |
details |
DrdIV | TACGAC | 30.1 | 33258 (34457) | ![]() |
details |
SnaBI | TACGTA | 44.5 | 22493 (25247) | ![]() |
details |
BspHI | TCATGA | 338.5 | 2954 (3161) | ![]() |
details |
Kpn2I | TCCGGA | 33.0 | 30266 (37714) | ![]() |
details |
MmeI | TCCRAC | 444.8 | 2248 (2333) | ![]() |
details |
TthHB8I | TCGA | 528.6 | 1891 (2087) | ![]() |
details |
Sbo13I | TCGCGA | 5.0 | 198470 (255722) | ![]() |
details |
HpyF17I | TCNGA | 2981.6 | 335 (362) | ![]() |
details |
HpyNSH57II | TCNNGA | 3552.0 | 281 (298) | ![]() |
details |
XbaI | TCTAGA | 279.3 | 3580 (3831) | ![]() |
details |
BclI | TGATCA | 255.5 | 3913 (4075) | ![]() |
details |
HpyCH4V | TGCA | 4993.6 | 200 (209) | ![]() |
details |
FspI | TGCGCA | 30.6 | 32668 (40144) | ![]() |
details |
MscI | TGGCCA | 453.2 | 2206 (2513) | ![]() |
details |
BsrGI | TGTACA | 288.2 | 3469 (3899) | ![]() |
details |
Enzyme | Specificity | Sites per Mbp | Distance mean, std | Distributions | |
MseI | TTAA | 6656.2 | 150 (214) | ![]() |
details |
PacI | TTAATTAA | 55.4 | 18038 (22316) | ![]() |
details |
PsiI | TTATAA | 572.2 | 1747 (2462) | ![]() |
details |
NspV | TTCGAA | 36.7 | 27232 (28088) | ![]() |
details |
DraI | TTTAAA | 1189.6 | 840 (1133) | ![]() |
details |
PspXI | VCTCGAGB | 20.4 | 49047 (62813) | ![]() |
details |
BsaWI | WCCGGW | 96.5 | 10362 (12538) | ![]() |
details |
BsaAI | YACGTR | 242.0 | 4131 (4481) | ![]() |
details |
EcoHK31I | YGGCCR | 603.0 | 1658 (2054) | ![]() |
details |