| Enzyme: | BstEII | Longest uncut segments |
| Specificity: | GGTNACC | Repeats in uncut segments |
| Number of sites: | 333942 | Genes in uncut segments |
| Mean distance between sites: | 8568 base pairs | |
| Standard deviation: | 9416 base pairs | |
| Site density | 116.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 492061 | chr15 | NT_037852.6 | 1396567-1888628 | 0.41 % in | 12 repeats | 0.00 % in | 0 genes |
| 2 | 411687 | chr6 | NT_167244.1 | 2351639-2763326 | 1.48 % in | 29 repeats | 0.00 % in | 0 genes |
| 3 | 227765 | chr6 | NT_167244.1 | 4383297-4611062 | 6.79 % in | 37 repeats | 0.15 % in | 1 genes |
| 4 | 212090 | chr7 | NT_023603.5 | 4138-216228 | 95.24 % in | 51 repeats | 0.00 % in | 0 genes |
| 5 | 202338 | chr6 | NT_167244.1 | 3786427-3988765 | 5.40 % in | 40 repeats | 0.53 % in | 1 genes |
| 6 | 197177 | chr6 | NT_167249.1 | 2127229-2324406 | 11.35 % in | 79 repeats | 0.00 % in | 0 genes |
| 7 | 196398 | chr12 | NT_029419.12 | 325759-522157 | 99.71 % in | 45 repeats | 0.00 % in | 0 genes |
| 8 | 186722 | chrX | NT_011669.17 | 94654-281376 | 99.54 % in | 39 repeats | 0.00 % in | 0 genes |
| 9 | 185272 | chr6 | NT_167247.1 | 4418599-4603871 | 2.88 % in | 28 repeats | 0.00 % in | 0 genes |
| 10 | 180681 | chr6 | NT_167244.1 | 3175364-3356045 | 1.71 % in | 25 repeats | 0.00 % in | 0 genes |
| 11 | 180557 | chr7 | NT_007933.15 | 214263-394820 | 99.64 % in | 38 repeats | 0.00 % in | 0 genes |
| 12 | 168100 | chr6 | NT_167247.1 | 1561934-1730034 | 1.04 % in | 9 repeats | 0.00 % in | 0 genes |
| 13 | 167284 | chr6 | NT_167248.1 | 515321-682605 | 4.47 % in | 7 repeats | 0.00 % in | 0 genes |
| 14 | 165318 | chr9 | NT_008470.19 | 21678863-21844181 | 5.02 % in | 29 repeats | 0.00 % in | 0 genes |
| 15 | 164222 | chrY | NT_011875.12 | 8469717-8633939 | 69.50 % in | 7 repeats | 0.00 % in | 0 genes |
| 16 | 161554 | chr5 | NT_006576.16 | 17484609-17646163 | 24.55 % in | 130 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 492061 | chr15 | NT_037852.6 | 1396567-1888628 | 12 | 11 | L2a (2) | (TA)n (1) | MLT1L (1) | |
| 2 | 411687 | chr6 | NT_167244.1 | 2351639-2763326 | 29 | 20 | AluJb (4) | L1ME4a (3) | MLT2D (2) | |
| 3 | 227765 | chr6 | NT_167244.1 | 4383297-4611062 | 37 | 20 | AluSx (6) | Harlequin-int (5) | HERVH-int (4) | |
| 4 | 212090 | chr7 | NT_023603.5 | 4138-216228 | 51 | 29 | AT_rich (8) | L1PA2 (4) | ALR/Alpha (4) | |
| 5 | 202338 | chr6 | NT_167244.1 | 3786427-3988765 | 40 | 31 | L2a (6) | MLT1H-int (2) | L1P3 (2) | |
| 6 | 197177 | chr6 | NT_167249.1 | 2127229-2324406 | 79 | 37 | AluSx (9) | Charlie2b (6) | L1MEc (4) | |
| 7 | 196398 | chr12 | NT_029419.12 | 325759-522157 | 45 | 11 | ALR/Alpha (27) | L1PA4 (3) | L1PA3 (3) | |
| 8 | 186722 | chrX | NT_011669.17 | 94654-281376 | 39 | 13 | ALR/Alpha (19) | L1PA2 (4) | L1PA3 (3) | |
| 9 | 185272 | chr6 | NT_167247.1 | 4418599-4603871 | 28 | 22 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 10 | 180681 | chr6 | NT_167244.1 | 3175364-3356045 | 25 | 15 | L1MB3 (4) | AluSx (4) | GC_rich (3) | |
| 11 | 180557 | chr7 | NT_007933.15 | 214263-394820 | 38 | 9 | ALR/Alpha (23) | AluY (5) | L1PA3 (3) | |
| 12 | 168100 | chr6 | NT_167247.1 | 1561934-1730034 | 9 | 7 | MIR (2) | L1MEe (2) | L1MC3 (1) | |
| 13 | 167284 | chr6 | NT_167248.1 | 515321-682605 | 7 | 7 | LTR7 (1) | L1PREC2 (1) | L1PA7 (1) | |
| 14 | 165318 | chr9 | NT_008470.19 | 21678863-21844181 | 29 | 21 | L1M5 (3) | MLT1G1 (2) | MER5B (2) | |
| 15 | 164222 | chrY | NT_011875.12 | 8469717-8633939 | 7 | 2 | LTR12B (6) | LTR12D (1) | ||
| 16 | 161554 | chr5 | NT_006576.16 | 17484609-17646163 | 130 | 24 | MLT1E3 (32) | Charlie2a (20) | AluSx (18) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 227765 | chr6 | NT_167244.1 | 4383297-4611062 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 202338 | chr6 | NT_167244.1 | 3786427-3988765 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |