| Enzyme: | AseI | Longest uncut segments |
| Specificity: | ATTAAT | Repeats in uncut segments |
| Number of sites: | 1455335 | Genes in uncut segments |
| Mean distance between sites: | 1966 base pairs | |
| Standard deviation: | 2711 base pairs | |
| Site density | 508.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 487370 | chr15 | NT_037852.6 | 1398325-1885695 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 402118 | chr6 | NT_167244.1 | 2359284-2761402 | 0.11 % in | 2 repeats | 0.00 % in | 0 genes |
| 3 | 246259 | chr6 | NT_167244.1 | 2009328-2255587 | 0.99 % in | 12 repeats | 1.80 % in | 2 genes |
| 4 | 213090 | chr6 | NT_167244.1 | 4389381-4602471 | 1.94 % in | 15 repeats | 0.00 % in | 0 genes |
| 5 | 186692 | chr6 | NT_167244.1 | 3177602-3364294 | 2.59 % in | 26 repeats | 5.75 % in | 2 genes |
| 6 | 185437 | chr6 | NT_167244.1 | 3789809-3975246 | 2.11 % in | 16 repeats | 0.00 % in | 0 genes |
| 7 | 182298 | chr6 | NT_167247.1 | 4412589-4594887 | 1.95 % in | 13 repeats | 97.52 % in | 1 genes |
| 8 | 172253 | chr6 | NT_167247.1 | 1561459-1733712 | 2.43 % in | 18 repeats | 0.87 % in | 1 genes |
| 9 | 169999 | chr6 | NT_167249.1 | 2135559-2305558 | 2.34 % in | 16 repeats | 0.00 % in | 0 genes |
| 10 | 168607 | chr4 | NT_006316.16 | 391056-559663 | 5.29 % in | 61 repeats | 0.00 % in | 0 genes |
| 11 | 162179 | chr6 | NT_167248.1 | 520031-682210 | 1.77 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 150718 | chr9 | NT_008470.19 | 21692744-21843462 | 0.34 % in | 2 repeats | 0.00 % in | 0 genes |
| 13 | 146385 | chr6 | NT_167244.1 | 2892152-3038537 | 1.71 % in | 12 repeats | 0.00 % in | 0 genes |
| 14 | 138349 | chr12 | NT_009714.17 | 27190245-27328594 | 83.94 % in | 134 repeats | 0.00 % in | 0 genes |
| 15 | 135523 | chr1 | NT_004350.19 | 2833548-2969071 | 18.04 % in | 131 repeats | 0.00 % in | 0 genes |
| 16 | 128533 | chr6 | NT_167245.1 | 2602423-2730956 | 5.32 % in | 21 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 487370 | chr15 | NT_037852.6 | 1398325-1885695 | 1 | 1 | AT_rich (1) | |||
| 2 | 402118 | chr6 | NT_167244.1 | 2359284-2761402 | 2 | 2 | L4 (1) | AluSp (1) | ||
| 3 | 246259 | chr6 | NT_167244.1 | 2009328-2255587 | 12 | 11 | MIRb (2) | MIR (1) | MER5A1 (1) | |
| 4 | 213090 | chr6 | NT_167244.1 | 4389381-4602471 | 15 | 11 | MER57-int (2) | HERVH-int (2) | AluSx (2) | |
| 5 | 186692 | chr6 | NT_167244.1 | 3177602-3364294 | 26 | 15 | AluSx (4) | MIR (3) | GC_rich (3) | |
| 6 | 185437 | chr6 | NT_167244.1 | 3789809-3975246 | 16 | 14 | MLT1H-int (2) | L2a (2) | THE1B (1) | |
| 7 | 182298 | chr6 | NT_167247.1 | 4412589-4594887 | 13 | 11 | L2b (3) | MIRc (1) | MIRb (1) | |
| 8 | 172253 | chr6 | NT_167247.1 | 1561459-1733712 | 18 | 14 | MSTB (2) | MIR (2) | L1MEf (2) | |
| 9 | 169999 | chr6 | NT_167249.1 | 2135559-2305558 | 16 | 9 | AluSx (4) | L1MB8 (3) | MLT1A (2) | |
| 10 | 168607 | chr4 | NT_006316.16 | 391056-559663 | 61 | 8 | (CA)n (47) | L1M4 (7) | L1PA10 (2) | |
| 11 | 162179 | chr6 | NT_167248.1 | 520031-682210 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 150718 | chr9 | NT_008470.19 | 21692744-21843462 | 2 | 2 | LTR67B (1) | L1M5 (1) | ||
| 13 | 146385 | chr6 | NT_167244.1 | 2892152-3038537 | 12 | 9 | L1MC5 (2) | AluY (2) | AluJo (2) | |
| 14 | 138349 | chr12 | NT_009714.17 | 27190245-27328594 | 134 | 12 | GSATII (116) | GSATX (4) | ALR/Alpha (4) | |
| 15 | 135523 | chr1 | NT_004350.19 | 2833548-2969071 | 131 | 52 | MIR3 (18) | MIR (8) | L1MEf (8) | |
| 16 | 128533 | chr6 | NT_167245.1 | 2602423-2730956 | 21 | 18 | Tigger1 (2) | MLT1N2 (2) | L2 (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 246259 | chr6 | NT_167244.1 | 2009328-2255587 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 186692 | chr6 | NT_167244.1 | 3177602-3364294 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 182298 | chr6 | NT_167247.1 | 4412589-4594887 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 172253 | chr6 | NT_167247.1 | 1561459-1733712 | LOC100421582 | tripartite_motif-containing_protein_26 |