| Enzyme: | TaqII | Longest uncut segments |
| Specificity: | GACCGA | Repeats in uncut segments |
| Number of sites: | 128582 | Genes in uncut segments |
| Mean distance between sites: | 22253 base pairs | |
| Standard deviation: | 26740 base pairs | |
| Site density | 44.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 520234 | chr15 | NT_037852.6 | 1385264-1905498 | 3.28 % in | 59 repeats | 1.92 % in | 1 genes |
| 2 | 421597 | chr6 | NT_167244.1 | 2345308-2766905 | 2.85 % in | 52 repeats | 0.00 % in | 0 genes |
| 3 | 392101 | chr1 | NT_032977.9 | 19900986-20293087 | 73.20 % in | 692 repeats | 100.00 % in | 1 genes |
| 4 | 356560 | chr4 | NT_006316.16 | 3393818-3750378 | 57.56 % in | 577 repeats | 0.00 % in | 0 genes |
| 5 | 351316 | chr4 | NT_016354.19 | 85523398-85874714 | 57.79 % in | 491 repeats | 0.00 % in | 0 genes |
| 6 | 326421 | chr5 | NT_006576.16 | 25409137-25735558 | 55.34 % in | 528 repeats | 0.00 % in | 0 genes |
| 7 | 326325 | chr4 | NT_016354.19 | 61060093-61386418 | 53.00 % in | 494 repeats | 14.31 % in | 1 genes |
| 8 | 324324 | chr7 | NT_007933.15 | 61840597-62164921 | 49.78 % in | 495 repeats | 0.47 % in | 2 genes |
| 9 | 318638 | chr14 | NT_026437.12 | 32506750-32825388 | 52.17 % in | 585 repeats | 0.00 % in | 0 genes |
| 10 | 310256 | chr6 | NT_025741.15 | 45251326-45561582 | 54.65 % in | 482 repeats | 0.00 % in | 0 genes |
| 11 | 302066 | chr14 | NT_026437.12 | 24640204-24942270 | 62.45 % in | 451 repeats | 0.00 % in | 0 genes |
| 12 | 301155 | chr18 | NT_010966.14 | 21025257-21326412 | 46.49 % in | 506 repeats | 0.00 % in | 0 genes |
| 13 | 301121 | chr10 | NT_008705.16 | 8838758-9139879 | 38.91 % in | 500 repeats | 0.00 % in | 0 genes |
| 14 | 300621 | chr13 | NT_024524.14 | 54620133-54920754 | 48.12 % in | 643 repeats | 0.00 % in | 0 genes |
| 15 | 287266 | chr6 | NT_007592.15 | 57803423-58090689 | 55.11 % in | 278 repeats | 0.00 % in | 0 genes |
| 16 | 285916 | chr3 | NT_005612.16 | 8947811-9233727 | 53.23 % in | 454 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 520234 | chr15 | NT_037852.6 | 1385264-1905498 | 59 | 36 | L1MDa (6) | AT_rich (5) | Tigger2 (3) | |
| 2 | 421597 | chr6 | NT_167244.1 | 2345308-2766905 | 52 | 31 | AluJb (5) | AluSx (4) | L1ME4a (3) | |
| 3 | 392101 | chr1 | NT_032977.9 | 19900986-20293087 | 692 | 189 | MIRb (59) | L2c (36) | MIR (32) | |
| 4 | 356560 | chr4 | NT_006316.16 | 3393818-3750378 | 577 | 172 | AT_rich (39) | MIRb (35) | MIR (24) | |
| 5 | 351316 | chr4 | NT_016354.19 | 85523398-85874714 | 491 | 171 | AT_rich (52) | L2a (20) | (TA)n (17) | |
| 6 | 326421 | chr5 | NT_006576.16 | 25409137-25735558 | 528 | 183 | AT_rich (71) | AluSx (15) | (TA)n (14) | |
| 7 | 326325 | chr4 | NT_016354.19 | 61060093-61386418 | 494 | 183 | AT_rich (72) | L2a (22) | MIR (14) | |
| 8 | 324324 | chr7 | NT_007933.15 | 61840597-62164921 | 495 | 159 | AT_rich (43) | AluSx (22) | L2 (19) | |
| 9 | 318638 | chr14 | NT_026437.12 | 32506750-32825388 | 585 | 181 | AluSx (31) | AT_rich (28) | MIRb (27) | |
| 10 | 310256 | chr6 | NT_025741.15 | 45251326-45561582 | 482 | 167 | AT_rich (43) | L1ME1 (16) | L1MEe (13) | |
| 11 | 302066 | chr14 | NT_026437.12 | 24640204-24942270 | 451 | 157 | AT_rich (65) | (TA)n (11) | L1M5 (11) | |
| 12 | 301155 | chr18 | NT_010966.14 | 21025257-21326412 | 506 | 167 | AT_rich (43) | AluSx (25) | MIRb (24) | |
| 13 | 301121 | chr10 | NT_008705.16 | 8838758-9139879 | 500 | 143 | AT_rich (56) | MIRb (27) | L2a (24) | |
| 14 | 300621 | chr13 | NT_024524.14 | 54620133-54920754 | 643 | 154 | AluSx (74) | AluJo (31) | AT_rich (29) | |
| 15 | 287266 | chr6 | NT_007592.15 | 57803423-58090689 | 278 | 114 | AT_rich (30) | SATR1 (14) | MIR (14) | |
| 16 | 285916 | chr3 | NT_005612.16 | 8947811-9233727 | 454 | 171 | AT_rich (48) | MIR (17) | L2a (16) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 520234 | chr15 | NT_037852.6 | 1385264-1905498 | LOC100418897 | |
| 3 | 392101 | chr1 | NT_032977.9 | 19900986-20293087 | LOC100507490 | BEN_domain-containing_protein_5 |
| 7 | 326325 | chr4 | NT_016354.19 | 61060093-61386418 | LOC100507528 | hypothetical_LOC100507528 |
| 8 | 324324 | chr7 | NT_007933.15 | 61840597-62164921 | LOC136157 | |
| RPS2P31 | ||||||