| Enzyme: | BceSIII | Longest uncut segments |
| Specificity: | ACGGC | Repeats in uncut segments |
| Number of sites: | 692836 | Genes in uncut segments |
| Mean distance between sites: | 4129 base pairs | |
| Standard deviation: | 5672 base pairs | |
| Site density | 242.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 503239 | chr15 | NT_037852.6 | 1398270-1901509 | 0.98 % in | 28 repeats | 1.68 % in | 1 genes |
| 2 | 403281 | chr6 | NT_167244.1 | 2359821-2763102 | 0.09 % in | 2 repeats | 0.00 % in | 0 genes |
| 3 | 210446 | chr6 | NT_167244.1 | 4388971-4599417 | 1.09 % in | 11 repeats | 0.00 % in | 0 genes |
| 4 | 190000 | chr6 | NT_167247.1 | 1554297-1744297 | 8.57 % in | 63 repeats | 4.56 % in | 1 genes |
| 5 | 182167 | chr6 | NT_167244.1 | 3789164-3971331 | 0.64 % in | 8 repeats | 0.00 % in | 0 genes |
| 6 | 176850 | chr6 | NT_167244.1 | 3179899-3356749 | 0.35 % in | 6 repeats | 0.50 % in | 2 genes |
| 7 | 175550 | chr6 | NT_167247.1 | 4421845-4597395 | 1.19 % in | 8 repeats | 100.00 % in | 1 genes |
| 8 | 171524 | chr6 | NT_167249.1 | 2134077-2305601 | 2.80 % in | 20 repeats | 0.00 % in | 0 genes |
| 9 | 166894 | chr6 | NT_167248.1 | 521792-688686 | 2.89 % in | 5 repeats | 0.00 % in | 0 genes |
| 10 | 160091 | chr6 | NT_167244.1 | 2007669-2167760 | 1.42 % in | 9 repeats | 0.00 % in | 0 genes |
| 11 | 158820 | chr9 | NT_008470.19 | 21687262-21846082 | 3.54 % in | 17 repeats | 0.00 % in | 0 genes |
| 12 | 154969 | chr7 | NT_023603.5 | 46092-201061 | 100.00 % in | 4 repeats | 0.00 % in | 0 genes |
| 13 | 144956 | chr6 | NT_167244.1 | 2894567-3039523 | 1.42 % in | 12 repeats | 0.00 % in | 0 genes |
| 14 | 126122 | chr6 | NT_167245.1 | 2598400-2724522 | 5.77 % in | 18 repeats | 0.00 % in | 0 genes |
| 15 | 118507 | chr6 | NT_167249.1 | 4720118-4838625 | 8.74 % in | 52 repeats | 0.00 % in | 0 genes |
| 16 | 117506 | chr6 | NT_167244.1 | 3486570-3604076 | 7.27 % in | 21 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 503239 | chr15 | NT_037852.6 | 1398270-1901509 | 28 | 17 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 403281 | chr6 | NT_167244.1 | 2359821-2763102 | 2 | 2 | L1MEg (1) | AluSp (1) | ||
| 3 | 210446 | chr6 | NT_167244.1 | 4388971-4599417 | 11 | 9 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 190000 | chr6 | NT_167247.1 | 1554297-1744297 | 63 | 38 | L1MEf (6) | L1PB2 (4) | L2c (3) | |
| 5 | 182167 | chr6 | NT_167244.1 | 3789164-3971331 | 8 | 8 | MLT1H-int (1) | MIR (1) | MER52D (1) | |
| 6 | 176850 | chr6 | NT_167244.1 | 3179899-3356749 | 6 | 5 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 175550 | chr6 | NT_167247.1 | 4421845-4597395 | 8 | 7 | MLT1J (2) | (TTAAA)n (1) | MER11A (1) | |
| 8 | 171524 | chr6 | NT_167249.1 | 2134077-2305601 | 20 | 12 | AluSx (4) | L1MB8 (3) | MLT1A (2) | |
| 9 | 166894 | chr6 | NT_167248.1 | 521792-688686 | 5 | 4 | AT_rich (2) | L1PREC2 (1) | HERVH-int (1) | |
| 10 | 160091 | chr6 | NT_167244.1 | 2007669-2167760 | 9 | 8 | AluSx (2) | MIRb (1) | MIR (1) | |
| 11 | 158820 | chr9 | NT_008470.19 | 21687262-21846082 | 17 | 11 | MER5B (2) | LTR67B (2) | L2 (2) | |
| 12 | 154969 | chr7 | NT_023603.5 | 46092-201061 | 4 | 2 | L1PA2 (2) | ALR/Alpha (2) | ||
| 13 | 144956 | chr6 | NT_167244.1 | 2894567-3039523 | 12 | 7 | L1MC5 (4) | AluSc (2) | AluJo (2) | |
| 14 | 126122 | chr6 | NT_167245.1 | 2598400-2724522 | 18 | 15 | MLT1N2 (2) | MER21C (2) | L2 (2) | |
| 15 | 118507 | chr6 | NT_167249.1 | 4720118-4838625 | 52 | 24 | AluSx (10) | AluY (6) | MLT1C (4) | |
| 16 | 117506 | chr6 | NT_167244.1 | 3486570-3604076 | 21 | 12 | L1M2 (4) | AluSx (3) | AluSg (3) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 503239 | chr15 | NT_037852.6 | 1398270-1901509 | LOC100418897 | |
| 4 | 190000 | chr6 | NT_167247.1 | 1554297-1744297 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 6 | 176850 | chr6 | NT_167244.1 | 3179899-3356749 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 175550 | chr6 | NT_167247.1 | 4421845-4597395 | LOC100507722 | hypothetical_protein_LOC100507722 |