| Enzyme: | PpiI | Longest uncut segments |
| Specificity: | GAACNNNNNCTC | Repeats in uncut segments |
| Number of sites: | 247036 | Genes in uncut segments |
| Mean distance between sites: | 11582 base pairs | |
| Standard deviation: | 12233 base pairs | |
| Site density | 86.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 492484 | chr15 | NT_037852.6 | 1393977-1886461 | 0.45 % in | 11 repeats | 0.00 % in | 0 genes |
| 2 | 414133 | chr6 | NT_167244.1 | 2357156-2771289 | 1.53 % in | 26 repeats | 0.00 % in | 0 genes |
| 3 | 267434 | chr11 | NT_009237.18 | 50327635-50595069 | 99.79 % in | 64 repeats | 0.00 % in | 0 genes |
| 4 | 251042 | chr6 | NT_167244.1 | 2003693-2254735 | 1.80 % in | 22 repeats | 3.47 % in | 3 genes |
| 5 | 227084 | chr9 | NT_078070.3 | 923207-1150291 | 57.78 % in | 243 repeats | 0.85 % in | 1 genes |
| 6 | 211213 | chr5 | NT_006576.16 | 46121633-46332846 | 99.83 % in | 45 repeats | 0.00 % in | 0 genes |
| 7 | 202562 | chr6 | NT_167247.1 | 1545006-1747568 | 10.15 % in | 88 repeats | 9.34 % in | 2 genes |
| 8 | 196576 | chr6 | NT_167246.1 | 3050006-3246582 | 16.68 % in | 136 repeats | 9.98 % in | 3 genes |
| 9 | 194410 | chr6 | NT_167244.1 | 3780353-3974763 | 3.67 % in | 30 repeats | 0.00 % in | 0 genes |
| 10 | 193772 | chr6 | NT_167249.1 | 2124520-2318292 | 9.12 % in | 74 repeats | 0.00 % in | 0 genes |
| 11 | 192101 | chr6 | NT_167248.1 | 490215-682316 | 10.78 % in | 36 repeats | 0.00 % in | 0 genes |
| 12 | 181412 | chr6 | NT_167244.1 | 3179373-3360785 | 1.68 % in | 16 repeats | 0.00 % in | 0 genes |
| 13 | 176174 | chr6 | NT_167247.1 | 4421825-4597999 | 1.50 % in | 9 repeats | 0.00 % in | 0 genes |
| 14 | 169076 | chr9 | NT_167189.1 | 893427-1062503 | 45.50 % in | 192 repeats | 0.00 % in | 0 genes |
| 15 | 160954 | chr6 | NT_167244.1 | 2883265-3044219 | 7.25 % in | 59 repeats | 0.00 % in | 0 genes |
| 16 | 160893 | chr9 | NT_008470.19 | 21687268-21848161 | 3.89 % in | 20 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 492484 | chr15 | NT_037852.6 | 1393977-1886461 | 11 | 9 | L1MDa (3) | MIRc (1) | MIRb (1) | |
| 2 | 414133 | chr6 | NT_167244.1 | 2357156-2771289 | 26 | 19 | AluY (3) | LTR84b (2) | L4 (2) | |
| 3 | 267434 | chr11 | NT_009237.18 | 50327635-50595069 | 64 | 14 | ALR/Alpha (30) | L1PA4 (7) | MER11C (6) | |
| 4 | 251042 | chr6 | NT_167244.1 | 2003693-2254735 | 22 | 15 | AluSx (4) | MIRb (2) | MIR (2) | |
| 5 | 227084 | chr9 | NT_078070.3 | 923207-1150291 | 243 | 102 | AT_rich (18) | AluSx (15) | AluY (14) | |
| 6 | 211213 | chr5 | NT_006576.16 | 46121633-46332846 | 45 | 9 | ALR/Alpha (29) | L1PA4 (4) | L1PA3 (3) | |
| 7 | 202562 | chr6 | NT_167247.1 | 1545006-1747568 | 88 | 47 | L1MEf (6) | MIR3 (5) | MIRc (4) | |
| 8 | 196576 | chr6 | NT_167246.1 | 3050006-3246582 | 136 | 52 | AluSx (21) | AluY (12) | L2c (7) | |
| 9 | 194410 | chr6 | NT_167244.1 | 3780353-3974763 | 30 | 22 | L2a (5) | MLT1H-int (2) | AT_rich (2) | |
| 10 | 193772 | chr6 | NT_167249.1 | 2124520-2318292 | 74 | 36 | AluSx (9) | Charlie2b (6) | HAL1 (4) | |
| 11 | 192101 | chr6 | NT_167248.1 | 490215-682316 | 36 | 30 | AT_rich (3) | MER4D (2) | L1PA14 (2) | |
| 12 | 181412 | chr6 | NT_167244.1 | 3179373-3360785 | 16 | 8 | AluSx (4) | GC_rich (3) | MIRb (2) | |
| 13 | 176174 | chr6 | NT_167247.1 | 4421825-4597999 | 9 | 7 | MLT1J (2) | AluSx (2) | (TTAAA)n (1) | |
| 14 | 169076 | chr9 | NT_167189.1 | 893427-1062503 | 192 | 87 | AT_rich (15) | (CAGGG)n (8) | AluSx (8) | |
| 15 | 160954 | chr6 | NT_167244.1 | 2883265-3044219 | 59 | 25 | AluY (7) | L1MC5 (6) | AluJo (5) | |
| 16 | 160893 | chr9 | NT_008470.19 | 21687268-21848161 | 20 | 13 | MIRb (2) | MER5B (2) | LTR67B (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 251042 | chr6 | NT_167244.1 | 2003693-2254735 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 227084 | chr9 | NT_078070.3 | 923207-1150291 | LOC644684 | hypothetical_LOC644684 |
| 7 | 202562 | chr6 | NT_167247.1 | 1545006-1747568 | LOC100421582 | tripartite_motif-containing_protein_26 |
| LOC100507720 | ||||||
| 8 | 196576 | chr6 | NT_167246.1 | 3050006-3246582 | MSH5 | mutS_protein_homolog_5_isoform_c |
| NEU1 | sialidase-1_precursor | |||||
| C2 | complement_C2_isoform_3 | |||||