| Enzyme: | MjaIV | Longest uncut segments |
| Specificity: | GTNNAC | Repeats in uncut segments |
| Number of sites: | 6199946 | Genes in uncut segments |
| Mean distance between sites: | 461 base pairs | |
| Standard deviation: | 478 base pairs | |
| Site density | 2166.8 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 488368 | chr15 | NT_037852.6 | 1397253-1885621 | 0.13 % in | 5 repeats | 0.00 % in | 0 genes |
| 2 | 402806 | chr6 | NT_167244.1 | 2358436-2761242 | 0.30 % in | 5 repeats | 0.00 % in | 0 genes |
| 3 | 208731 | chr6 | NT_167244.1 | 4389458-4598189 | 0.39 % in | 6 repeats | 0.00 % in | 0 genes |
| 4 | 180633 | chr6 | NT_167244.1 | 3790034-3970667 | 0.16 % in | 3 repeats | 0.00 % in | 0 genes |
| 5 | 176379 | chr6 | NT_167244.1 | 3179895-3356274 | 0.24 % in | 5 repeats | 0.24 % in | 2 genes |
| 6 | 172640 | chr6 | NT_167247.1 | 4421823-4594463 | 0.12 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 166076 | chr6 | NT_167249.1 | 2137781-2303857 | 0.51 % in | 6 repeats | 0.00 % in | 0 genes |
| 8 | 164833 | chr6 | NT_167247.1 | 1562903-1727736 | 0.32 % in | 4 repeats | 0.03 % in | 1 genes |
| 9 | 161279 | chr6 | NT_167248.1 | 520943-682222 | 1.22 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 155869 | chr6 | NT_167244.1 | 2009166-2165035 | 0.07 % in | 1 repeats | 0.00 % in | 0 genes |
| 11 | 145475 | chr6 | NT_167244.1 | 2893504-3038979 | 1.26 % in | 10 repeats | 0.00 % in | 0 genes |
| 12 | 119123 | chr6 | NT_167245.1 | 2605363-2724486 | 1.33 % in | 4 repeats | 0.00 % in | 0 genes |
| 13 | 115157 | chr6 | NT_167247.1 | 1177344-1292501 | 0.28 % in | 1 repeats | 0.00 % in | 0 genes |
| 14 | 114039 | chr6 | NT_167246.1 | 3260487-3374526 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 15 | 109140 | chr6 | NT_167245.1 | 137557-246697 | 1.13 % in | 3 repeats | 0.00 % in | 0 genes |
| 16 | 104956 | chr6 | NT_167244.1 | 1451381-1556337 | 0.34 % in | 3 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 488368 | chr15 | NT_037852.6 | 1397253-1885621 | 5 | 5 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 402806 | chr6 | NT_167244.1 | 2358436-2761242 | 5 | 4 | AluJb (2) | L4 (1) | L1ME4a (1) | |
| 3 | 208731 | chr6 | NT_167244.1 | 4389458-4598189 | 6 | 6 | (TTCC)n (1) | MER57-int (1) | AluY (1) | |
| 4 | 180633 | chr6 | NT_167244.1 | 3790034-3970667 | 3 | 3 | MLT1H-int (1) | MER52D (1) | AluJb (1) | |
| 5 | 176379 | chr6 | NT_167244.1 | 3179895-3356274 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 172640 | chr6 | NT_167247.1 | 4421823-4594463 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 166076 | chr6 | NT_167249.1 | 2137781-2303857 | 6 | 4 | L1MB8 (2) | AluSx (2) | L1MC4a (1) | |
| 8 | 164833 | chr6 | NT_167247.1 | 1562903-1727736 | 4 | 3 | MIR (2) | (GGAA)n (1) | AluSq (1) | |
| 9 | 161279 | chr6 | NT_167248.1 | 520943-682222 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 155869 | chr6 | NT_167244.1 | 2009166-2165035 | 1 | 1 | MIRb (1) | |||
| 11 | 145475 | chr6 | NT_167244.1 | 2893504-3038979 | 10 | 7 | L1MC5 (2) | AluSc (2) | AluJo (2) | |
| 12 | 119123 | chr6 | NT_167245.1 | 2605363-2724486 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 13 | 115157 | chr6 | NT_167247.1 | 1177344-1292501 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 14 | 114039 | chr6 | NT_167246.1 | 3260487-3374526 | 1 | 1 | MIR3 (1) | |||
| 15 | 109140 | chr6 | NT_167245.1 | 137557-246697 | 3 | 3 | MLT1F (1) | MLT1E2 (1) | LTR12C (1) | |
| 16 | 104956 | chr6 | NT_167244.1 | 1451381-1556337 | 3 | 3 | ERV3-16A3_I-int (1) | AluY (1) | AluSg1 (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 176379 | chr6 | NT_167244.1 | 3179895-3356274 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 172640 | chr6 | NT_167247.1 | 4421823-4594463 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 164833 | chr6 | NT_167247.1 | 1562903-1727736 | LOC100421582 | tripartite_motif-containing_protein_26 |