| Enzyme: | BssSI | Longest uncut segments |
| Specificity: | CACGAG | Repeats in uncut segments |
| Number of sites: | 387590 | Genes in uncut segments |
| Mean distance between sites: | 7382 base pairs | |
| Standard deviation: | 8789 base pairs | |
| Site density | 135.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 496233 | chr15 | NT_037852.6 | 1395271-1891504 | 0.88 % in | 20 repeats | 0.00 % in | 0 genes |
| 2 | 408682 | chr6 | NT_167244.1 | 2355717-2764399 | 0.90 % in | 18 repeats | 0.00 % in | 0 genes |
| 3 | 248639 | chr6 | NT_167244.1 | 2008429-2257068 | 1.76 % in | 19 repeats | 2.15 % in | 2 genes |
| 4 | 217514 | chr6 | NT_167244.1 | 4383069-4600583 | 2.46 % in | 19 repeats | 0.27 % in | 1 genes |
| 5 | 208607 | chr6 | NT_167244.1 | 3787585-3996192 | 7.43 % in | 58 repeats | 0.00 % in | 0 genes |
| 6 | 187291 | chr6 | NT_167247.1 | 4408415-4595706 | 2.63 % in | 19 repeats | 97.08 % in | 2 genes |
| 7 | 181683 | chr6 | NT_167244.1 | 3179906-3361589 | 1.91 % in | 17 repeats | 3.15 % in | 2 genes |
| 8 | 177838 | chr6 | NT_167248.1 | 514981-692819 | 7.47 % in | 14 repeats | 0.64 % in | 1 genes |
| 9 | 177149 | chrY | NT_011875.12 | 8532871-8710020 | 71.69 % in | 10 repeats | 0.00 % in | 0 genes |
| 10 | 176061 | chr6 | NT_167249.1 | 2135279-2311340 | 4.06 % in | 35 repeats | 0.00 % in | 0 genes |
| 11 | 175514 | chr6 | NT_167247.1 | 1556537-1732051 | 3.36 % in | 30 repeats | 0.00 % in | 0 genes |
| 12 | 169405 | chr9 | NT_008470.19 | 21678725-21848130 | 5.76 % in | 36 repeats | 0.00 % in | 0 genes |
| 13 | 164151 | chr4 | NT_006316.16 | 396194-560345 | 5.29 % in | 57 repeats | 0.00 % in | 0 genes |
| 14 | 150722 | chr7 | NT_077528.2 | 21043-171765 | 66.68 % in | 26 repeats | 0.00 % in | 0 genes |
| 15 | 146501 | chr6 | NT_167244.1 | 2891008-3037509 | 1.82 % in | 11 repeats | 0.00 % in | 0 genes |
| 16 | 137657 | chr4 | NT_016354.19 | 61595898-61733555 | 51.14 % in | 196 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 496233 | chr15 | NT_037852.6 | 1395271-1891504 | 20 | 17 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 408682 | chr6 | NT_167244.1 | 2355717-2764399 | 18 | 12 | AluJb (3) | MLT2D (2) | L4 (2) | |
| 3 | 248639 | chr6 | NT_167244.1 | 2008429-2257068 | 19 | 16 | MIRb (2) | MIR (2) | AluSx (2) | |
| 4 | 217514 | chr6 | NT_167244.1 | 4383069-4600583 | 19 | 13 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 5 | 208607 | chr6 | NT_167244.1 | 3787585-3996192 | 58 | 41 | L2a (6) | L1P3 (3) | L1MEc (3) | |
| 6 | 187291 | chr6 | NT_167247.1 | 4408415-4595706 | 19 | 15 | L2b (3) | (TGGA)n (2) | MIRb (2) | |
| 7 | 181683 | chr6 | NT_167244.1 | 3179906-3361589 | 17 | 9 | AluSx (4) | MIRb (2) | MIR (2) | |
| 8 | 177838 | chr6 | NT_167248.1 | 514981-692819 | 14 | 11 | AT_rich (4) | MLT1G3 (1) | LTR7 (1) | |
| 9 | 177149 | chrY | NT_011875.12 | 8532871-8710020 | 10 | 1 | LTR12B (10) | |||
| 10 | 176061 | chr6 | NT_167249.1 | 2135279-2311340 | 35 | 18 | Charlie2b (6) | AluSx (5) | L1MB8 (3) | |
| 11 | 175514 | chr6 | NT_167247.1 | 1556537-1732051 | 30 | 24 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 12 | 169405 | chr9 | NT_008470.19 | 21678725-21848130 | 36 | 24 | MIRb (3) | L1M5 (3) | AluSq (3) | |
| 13 | 164151 | chr4 | NT_006316.16 | 396194-560345 | 57 | 7 | (CA)n (44) | L1M4 (7) | L1PA10 (2) | |
| 14 | 150722 | chr7 | NT_077528.2 | 21043-171765 | 26 | 7 | ALR/Alpha (16) | L1PA4 (3) | L1P1 (2) | |
| 15 | 146501 | chr6 | NT_167244.1 | 2891008-3037509 | 11 | 8 | AluY (4) | (TG)n (1) | (TCC)n (1) | |
| 16 | 137657 | chr4 | NT_016354.19 | 61595898-61733555 | 196 | 90 | AT_rich (29) | (TA)n (8) | AluY (8) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 248639 | chr6 | NT_167244.1 | 2008429-2257068 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 217514 | chr6 | NT_167244.1 | 4383069-4600583 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 6 | 187291 | chr6 | NT_167247.1 | 4408415-4595706 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| 7 | 181683 | chr6 | NT_167244.1 | 3179906-3361589 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 177838 | chr6 | NT_167248.1 | 514981-692819 | OR12D1P | |