| Enzyme: | EciI | Longest uncut segments |
| Specificity: | GGCGGA | Repeats in uncut segments |
| Number of sites: | 566922 | Genes in uncut segments |
| Mean distance between sites: | 5047 base pairs | |
| Standard deviation: | 8085 base pairs | |
| Site density | 198.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494303 | chr15 | NT_037852.6 | 1397194-1891497 | 0.79 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 404492 | chr6 | NT_167244.1 | 2359914-2764406 | 0.12 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 332453 | chrY | NT_011875.12 | 8386841-8719294 | 82.26 % in | 69 repeats | 0.00 % in | 0 genes |
| 4 | 273968 | chr11 | NT_009237.18 | 48567064-48841032 | 93.17 % in | 99 repeats | 0.70 % in | 2 genes |
| 5 | 251792 | chr10 | NT_033985.7 | 1-251793 | 69.85 % in | 207 repeats | 6.68 % in | 29 genes |
| 6 | 235627 | chr19 | NT_011109.16 | 158653-394280 | 99.78 % in | 58 repeats | 0.00 % in | 0 genes |
| 7 | 208532 | chr11 | NT_009237.18 | 50412129-50620661 | 99.81 % in | 38 repeats | 0.00 % in | 0 genes |
| 8 | 208486 | chr6 | NT_167244.1 | 4389908-4598394 | 0.28 % in | 3 repeats | 0.00 % in | 0 genes |
| 9 | 201543 | chrY | NT_011896.9 | 5171811-5373354 | 80.45 % in | 309 repeats | 0.00 % in | 0 genes |
| 10 | 199085 | chr6 | NT_167248.1 | 488877-687962 | 12.83 % in | 40 repeats | 0.00 % in | 0 genes |
| 11 | 196094 | chr6 | NT_167244.1 | 3788520-3984614 | 4.51 % in | 36 repeats | 0.00 % in | 0 genes |
| 12 | 195450 | chr8 | NT_167187.1 | 31440279-31635729 | 99.84 % in | 44 repeats | 0.00 % in | 0 genes |
| 13 | 185068 | chr7 | NT_007933.15 | 125964-311032 | 99.65 % in | 36 repeats | 0.00 % in | 0 genes |
| 14 | 184369 | chr7 | NT_007933.15 | 311032-495401 | 98.34 % in | 48 repeats | 0.00 % in | 0 genes |
| 15 | 183985 | chrX | NT_011669.17 | 149628-333613 | 98.99 % in | 44 repeats | 0.00 % in | 0 genes |
| 16 | 177675 | chr6 | NT_007299.13 | 222853-400528 | 57.24 % in | 104 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494303 | chr15 | NT_037852.6 | 1397194-1891497 | 18 | 15 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 404492 | chr6 | NT_167244.1 | 2359914-2764406 | 3 | 3 | L1MEg (1) | AluY (1) | AluSp (1) | |
| 3 | 332453 | chrY | NT_011875.12 | 8386841-8719294 | 69 | 32 | LTR12B (17) | AT_rich (5) | AluY (5) | |
| 4 | 273968 | chr11 | NT_009237.18 | 48567064-48841032 | 99 | 37 | ALR/Alpha (28) | L1PA4 (9) | MLT1H1-int (5) | |
| 5 | 251792 | chr10 | NT_033985.7 | 1-251793 | 207 | 43 | ALR/Alpha (21) | HSATII (20) | (GAATG)n (17) | |
| 6 | 235627 | chr19 | NT_011109.16 | 158653-394280 | 58 | 13 | ALR/Alpha (35) | L1PA4 (7) | L1PA3 (5) | |
| 7 | 208532 | chr11 | NT_009237.18 | 50412129-50620661 | 38 | 11 | ALR/Alpha (20) | L1PA4 (4) | L1PA3 (3) | |
| 8 | 208486 | chr6 | NT_167244.1 | 4389908-4598394 | 3 | 3 | AluSx (1) | AluSg/x (1) | AluJo (1) | |
| 9 | 201543 | chrY | NT_011896.9 | 5171811-5373354 | 309 | 66 | BSR/Beta (163) | AT_rich (11) | AluSc (9) | |
| 10 | 199085 | chr6 | NT_167248.1 | 488877-687962 | 40 | 33 | AT_rich (4) | MER4D (2) | L1PA14 (2) | |
| 11 | 196094 | chr6 | NT_167244.1 | 3788520-3984614 | 36 | 28 | L2a (6) | MLT1H-int (2) | L1M5 (2) | |
| 12 | 195450 | chr8 | NT_167187.1 | 31440279-31635729 | 44 | 12 | ALR/Alpha (25) | L1PA2 (3) | MER11C (2) | |
| 13 | 185068 | chr7 | NT_007933.15 | 125964-311032 | 36 | 9 | ALR/Alpha (20) | L1PA4 (6) | AluY (3) | |
| 14 | 184369 | chr7 | NT_007933.15 | 311032-495401 | 48 | 14 | ALR/Alpha (26) | AluY (4) | L1PA4 (3) | |
| 15 | 183985 | chrX | NT_011669.17 | 149628-333613 | 44 | 17 | ALR/Alpha (22) | MER9B (2) | MER11D (2) | |
| 16 | 177675 | chr6 | NT_007299.13 | 222853-400528 | 104 | 57 | ALR/Alpha (16) | AT_rich (7) | MIRb (4) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 273968 | chr11 | NT_009237.18 | 48567064-48841032 | OR4A42P | |
| OR4A44P | ||||||
| 5 | 251792 | chr10 | NT_033985.7 | 1-251793 | LOC100506968 | |
| LOC100506743 | ||||||
| LOC100506987 | ||||||
| LOC100507020 | hypothetical_protein_LOC100507020 | |||||
| LOC100507045 | ||||||
| LOC100507078 | ||||||
| LOC100507104 | ||||||
| LOC100507129 | ||||||
| LOC100507154 | hypothetical_protein_LOC100507154 | |||||
| LOC100507189 | ||||||
| LOC100507216 | ||||||
| LOC100507234 | ||||||
| LOC100507262 | ||||||
| LOC100507287 | ||||||
| LOC100507320 | ||||||
| LOC100507339 | hypothetical_protein_LOC100507339 | |||||
| LOC100507366 | ||||||
| LOC100507385 | ||||||
| LOC100507409 | ||||||
| LOC100507432 | ||||||
| LOC100507451 | ||||||
| LOC100507471 | ||||||
| LOC100507491 | hypothetical_protein_LOC100507491 | |||||
| LOC100507517 | ||||||
| LOC100507542 | hypothetical_protein_LOC100507542 | |||||
| LOC100507565 | ||||||
| LOC100507597 | ||||||
| LOC100506770 | ||||||
| LOC100507622 | ||||||