| Enzyme: | BscGI | Longest uncut segments |
| Specificity: | CCCGT | Repeats in uncut segments |
| Number of sites: | 1071903 | Genes in uncut segments |
| Mean distance between sites: | 2669 base pairs | |
| Standard deviation: | 3657 base pairs | |
| Site density | 374.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 491874 | chr15 | NT_037852.6 | 1397113-1888987 | 0.44 % in | 12 repeats | 0.00 % in | 0 genes |
| 2 | 404494 | chr6 | NT_167244.1 | 2359861-2764355 | 0.12 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 213526 | chr6 | NT_167244.1 | 4388626-4602152 | 2.14 % in | 15 repeats | 0.00 % in | 0 genes |
| 4 | 191889 | chr6 | NT_167244.1 | 3781918-3973807 | 3.08 % in | 26 repeats | 2.90 % in | 1 genes |
| 5 | 179851 | chr6 | NT_167249.1 | 2129788-2309639 | 5.83 % in | 49 repeats | 0.00 % in | 0 genes |
| 6 | 178205 | chr6 | NT_167247.1 | 1562816-1741021 | 5.24 % in | 32 repeats | 0.08 % in | 1 genes |
| 7 | 176367 | chr6 | NT_167247.1 | 4421613-4597980 | 1.50 % in | 9 repeats | 100.00 % in | 1 genes |
| 8 | 175255 | chr6 | NT_167244.1 | 3180106-3355361 | 0.08 % in | 3 repeats | 0.07 % in | 1 genes |
| 9 | 163063 | chr6 | NT_167248.1 | 519842-682905 | 2.30 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 156720 | chr6 | NT_167244.1 | 2008385-2165105 | 0.48 % in | 4 repeats | 0.00 % in | 0 genes |
| 11 | 152769 | chr9 | NT_008470.19 | 21690929-21843698 | 1.04 % in | 7 repeats | 0.00 % in | 0 genes |
| 12 | 146562 | chr6 | NT_167244.1 | 2891349-3037911 | 1.85 % in | 13 repeats | 0.00 % in | 0 genes |
| 13 | 124127 | chr6 | NT_167245.1 | 2604008-2728135 | 3.73 % in | 14 repeats | 0.00 % in | 0 genes |
| 14 | 116502 | chr6 | NT_167247.1 | 1175834-1292336 | 1.57 % in | 2 repeats | 0.00 % in | 0 genes |
| 15 | 114081 | chr6 | NT_167246.1 | 3261159-3375240 | 0.41 % in | 3 repeats | 0.00 % in | 0 genes |
| 16 | 111415 | chr6 | NT_167247.1 | 2704981-2816396 | 8.91 % in | 30 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 491874 | chr15 | NT_037852.6 | 1397113-1888987 | 12 | 10 | L2a (3) | (TA)n (1) | MLT1L (1) | |
| 2 | 404494 | chr6 | NT_167244.1 | 2359861-2764355 | 3 | 3 | L1MEg (1) | AluY (1) | AluSp (1) | |
| 3 | 213526 | chr6 | NT_167244.1 | 4388626-4602152 | 15 | 11 | MER57-int (2) | HERVH-int (2) | AluSx (2) | |
| 4 | 191889 | chr6 | NT_167244.1 | 3781918-3973807 | 26 | 18 | L2a (5) | MLT1H-int (2) | AT_rich (2) | |
| 5 | 179851 | chr6 | NT_167249.1 | 2129788-2309639 | 49 | 24 | Charlie2b (6) | AluSx (6) | MamGypLTR1b (3) | |
| 6 | 178205 | chr6 | NT_167247.1 | 1562816-1741021 | 32 | 20 | L1PB2 (4) | L1MEf (3) | MSTB (2) | |
| 7 | 176367 | chr6 | NT_167247.1 | 4421613-4597980 | 9 | 7 | MLT1J (2) | AluSx (2) | (TTAAA)n (1) | |
| 8 | 175255 | chr6 | NT_167244.1 | 3180106-3355361 | 3 | 3 | GC_rich (1) | (CCG)n (1) | AluSp (1) | |
| 9 | 163063 | chr6 | NT_167248.1 | 519842-682905 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 156720 | chr6 | NT_167244.1 | 2008385-2165105 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 11 | 152769 | chr9 | NT_008470.19 | 21690929-21843698 | 7 | 6 | LTR67B (2) | MSTA (1) | MIR3 (1) | |
| 12 | 146562 | chr6 | NT_167244.1 | 2891349-3037911 | 13 | 10 | AluY (3) | AluJo (2) | (TG)n (1) | |
| 13 | 124127 | chr6 | NT_167245.1 | 2604008-2728135 | 14 | 12 | Tigger1 (2) | L2 (2) | MLT2A2 (1) | |
| 14 | 116502 | chr6 | NT_167247.1 | 1175834-1292336 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| 15 | 114081 | chr6 | NT_167246.1 | 3261159-3375240 | 3 | 2 | MIRb (2) | AluSx (1) | ||
| 16 | 111415 | chr6 | NT_167247.1 | 2704981-2816396 | 30 | 20 | L1MEf (5) | ERV3-16A3_I-int (4) | HAL1 (3) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 191889 | chr6 | NT_167244.1 | 3781918-3973807 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 178205 | chr6 | NT_167247.1 | 1562816-1741021 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 7 | 176367 | chr6 | NT_167247.1 | 4421613-4597980 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 175255 | chr6 | NT_167244.1 | 3180106-3355361 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |