| Enzyme: | NgoFVII | Longest uncut segments |
| Specificity: | GCSGC | Repeats in uncut segments |
| Number of sites: | 897333 | Genes in uncut segments |
| Mean distance between sites: | 3188 base pairs | |
| Standard deviation: | 6458 base pairs | |
| Site density | 313.6 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 506322 | chr15 | NT_037852.6 | 1396899-1903221 | 1.26 % in | 35 repeats | 1.97 % in | 1 genes |
| 2 | 408532 | chr6 | NT_167244.1 | 2354827-2763359 | 0.94 % in | 18 repeats | 0.00 % in | 0 genes |
| 3 | 217166 | chr6 | NT_167244.1 | 4381397-4598563 | 2.25 % in | 15 repeats | 1.04 % in | 1 genes |
| 4 | 187944 | chr6 | NT_167244.1 | 3788247-3976191 | 2.59 % in | 22 repeats | 0.00 % in | 0 genes |
| 5 | 183002 | chr6 | NT_167247.1 | 1562936-1745938 | 6.38 % in | 42 repeats | 0.01 % in | 1 genes |
| 6 | 182124 | chr6 | NT_167249.1 | 2134963-2317087 | 6.36 % in | 50 repeats | 0.00 % in | 0 genes |
| 7 | 181536 | chr7 | NT_077528.2 | 60209-241745 | 72.25 % in | 37 repeats | 0.00 % in | 0 genes |
| 8 | 175997 | chr6 | NT_167244.1 | 3180302-3356299 | 0.18 % in | 2 repeats | 0.07 % in | 1 genes |
| 9 | 172732 | chr6 | NT_167247.1 | 4421692-4594424 | 0.10 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 172543 | chr6 | NT_007299.13 | 182144-354687 | 52.46 % in | 109 repeats | 0.00 % in | 0 genes |
| 11 | 161236 | chr6 | NT_167248.1 | 520121-681357 | 1.19 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 155620 | chr9 | NT_008470.19 | 21692258-21847878 | 1.46 % in | 11 repeats | 0.00 % in | 0 genes |
| 13 | 154648 | chr6 | NT_167244.1 | 2886078-3040726 | 6.00 % in | 49 repeats | 0.00 % in | 0 genes |
| 14 | 145459 | chr5 | NT_023133.13 | 9663566-9809025 | 54.60 % in | 281 repeats | 0.00 % in | 0 genes |
| 15 | 140181 | chr6 | NT_025741.15 | 8600444-8740625 | 50.13 % in | 203 repeats | 0.00 % in | 0 genes |
| 16 | 137037 | chr1 | NT_004487.19 | 42946741-43083778 | 47.67 % in | 247 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 506322 | chr15 | NT_037852.6 | 1396899-1903221 | 35 | 23 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 408532 | chr6 | NT_167244.1 | 2354827-2763359 | 18 | 11 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 217166 | chr6 | NT_167244.1 | 4381397-4598563 | 15 | 11 | MER57-int (3) | AluY (2) | AluSx (2) | |
| 4 | 187944 | chr6 | NT_167244.1 | 3788247-3976191 | 22 | 18 | L2a (3) | MLT1H-int (2) | AT_rich (2) | |
| 5 | 183002 | chr6 | NT_167247.1 | 1562936-1745938 | 42 | 24 | L1MEf (6) | L1PB2 (4) | MSTB (2) | |
| 6 | 182124 | chr6 | NT_167249.1 | 2134963-2317087 | 50 | 28 | Charlie2b (6) | AluSx (6) | L1MB8 (3) | |
| 7 | 181536 | chr7 | NT_077528.2 | 60209-241745 | 37 | 6 | ALR/Alpha (21) | L1PA4 (5) | L1P1 (4) | |
| 8 | 175997 | chr6 | NT_167244.1 | 3180302-3356299 | 2 | 2 | Charlie4a (1) | AluSp (1) | ||
| 9 | 172732 | chr6 | NT_167247.1 | 4421692-4594424 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 10 | 172543 | chr6 | NT_007299.13 | 182144-354687 | 109 | 54 | ALR/Alpha (16) | AT_rich (11) | L1PA3 (6) | |
| 11 | 161236 | chr6 | NT_167248.1 | 520121-681357 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 155620 | chr9 | NT_008470.19 | 21692258-21847878 | 11 | 8 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 13 | 154648 | chr6 | NT_167244.1 | 2886078-3040726 | 49 | 22 | L1MC5 (6) | AluY (6) | AluSx (4) | |
| 14 | 145459 | chr5 | NT_023133.13 | 9663566-9809025 | 281 | 95 | MIRb (19) | AT_rich (18) | L2a (12) | |
| 15 | 140181 | chr6 | NT_025741.15 | 8600444-8740625 | 203 | 88 | AT_rich (20) | (TA)n (9) | MIRb (8) | |
| 16 | 137037 | chr1 | NT_004487.19 | 42946741-43083778 | 247 | 116 | AT_rich (28) | L2a (11) | L2 (9) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 506322 | chr15 | NT_037852.6 | 1396899-1903221 | LOC100418897 | |
| 3 | 217166 | chr6 | NT_167244.1 | 4381397-4598563 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 183002 | chr6 | NT_167247.1 | 1562936-1745938 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 8 | 175997 | chr6 | NT_167244.1 | 3180302-3356299 | TNXB | tenascin-X_isoform_1_precursor |