| Enzyme: | SfoI | Longest uncut segments |
| Specificity: | GGCGCC | Repeats in uncut segments |
| Number of sites: | 228914 | Genes in uncut segments |
| Mean distance between sites: | 12499 base pairs | |
| Standard deviation: | 19651 base pairs | |
| Site density | 80.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494438 | chr15 | NT_037852.6 | 1397157-1891595 | 0.82 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 484030 | chrX | NT_011669.17 | 4597559-5081589 | 80.99 % in | 713 repeats | 0.34 % in | 2 genes |
| 3 | 417901 | chr6 | NT_167244.1 | 2357670-2775571 | 1.88 % in | 35 repeats | 0.00 % in | 0 genes |
| 4 | 391733 | chrX | NT_011651.17 | 8876031-9267764 | 54.48 % in | 531 repeats | 100.00 % in | 1 genes |
| 5 | 378671 | chr11 | NT_009237.18 | 50309325-50687996 | 98.01 % in | 103 repeats | 2.77 % in | 1 genes |
| 6 | 352567 | chr7 | NT_007933.15 | 1-352568 | 99.53 % in | 79 repeats | 0.00 % in | 0 genes |
| 7 | 340581 | chr20 | NT_011362.10 | 11543138-11883719 | 46.12 % in | 704 repeats | 100.00 % in | 1 genes |
| 8 | 339805 | chr2 | NT_022184.15 | 685852-1025657 | 41.98 % in | 489 repeats | 0.00 % in | 0 genes |
| 9 | 328419 | chr19 | NT_011109.16 | 65958-394377 | 99.77 % in | 78 repeats | 0.00 % in | 0 genes |
| 10 | 319218 | chrY | NT_011875.12 | 8412519-8731737 | 82.55 % in | 71 repeats | 0.00 % in | 0 genes |
| 11 | 315930 | chrX | NT_011651.17 | 22176944-22492874 | 63.84 % in | 402 repeats | 0.00 % in | 0 genes |
| 12 | 315111 | chr7 | NT_007933.15 | 53536064-53851175 | 43.30 % in | 447 repeats | 0.00 % in | 0 genes |
| 13 | 308867 | chr12 | NT_029419.12 | 45793820-46102687 | 57.41 % in | 448 repeats | 0.00 % in | 0 genes |
| 14 | 301494 | chr3 | NT_005612.16 | 67866158-68167652 | 58.19 % in | 475 repeats | 0.00 % in | 0 genes |
| 15 | 295185 | chr2 | NT_022184.15 | 28034881-28330066 | 50.49 % in | 451 repeats | 0.00 % in | 0 genes |
| 16 | 291097 | chr8 | NT_008046.16 | 51103248-51394345 | 56.60 % in | 502 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494438 | chr15 | NT_037852.6 | 1397157-1891595 | 18 | 15 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 484030 | chrX | NT_011669.17 | 4597559-5081589 | 713 | 181 | MIRb (39) | MIRc (24) | MIR (24) | |
| 3 | 417901 | chr6 | NT_167244.1 | 2357670-2775571 | 35 | 22 | AluY (4) | L4 (3) | AluJo (3) | |
| 4 | 391733 | chrX | NT_011651.17 | 8876031-9267764 | 531 | 148 | AT_rich (59) | MIR (20) | MIRb (15) | |
| 5 | 378671 | chr11 | NT_009237.18 | 50309325-50687996 | 103 | 34 | ALR/Alpha (35) | L1PA4 (7) | L1PA3 (7) | |
| 6 | 352567 | chr7 | NT_007933.15 | 1-352568 | 79 | 16 | ALR/Alpha (45) | L1PA4 (7) | L1PA2 (6) | |
| 7 | 340581 | chr20 | NT_011362.10 | 11543138-11883719 | 704 | 181 | MIRb (67) | MIR (57) | L2a (36) | |
| 8 | 339805 | chr2 | NT_022184.15 | 685852-1025657 | 489 | 163 | AT_rich (40) | MIRb (34) | MIR (20) | |
| 9 | 328419 | chr19 | NT_011109.16 | 65958-394377 | 78 | 15 | ALR/Alpha (47) | L1PA3 (9) | L1PA4 (7) | |
| 10 | 319218 | chrY | NT_011875.12 | 8412519-8731737 | 71 | 31 | LTR12B (17) | L1PA16 (7) | L1ME3A (6) | |
| 11 | 315930 | chrX | NT_011651.17 | 22176944-22492874 | 402 | 147 | AT_rich (38) | MIRb (18) | MIR (11) | |
| 12 | 315111 | chr7 | NT_007933.15 | 53536064-53851175 | 447 | 147 | AT_rich (54) | MIRb (17) | MIR (17) | |
| 13 | 308867 | chr12 | NT_029419.12 | 45793820-46102687 | 448 | 168 | AT_rich (37) | L2a (27) | MIR (12) | |
| 14 | 301494 | chr3 | NT_005612.16 | 67866158-68167652 | 475 | 175 | AT_rich (38) | MIRb (19) | L2c (19) | |
| 15 | 295185 | chr2 | NT_022184.15 | 28034881-28330066 | 451 | 143 | MIRb (40) | L2a (33) | MIR (29) | |
| 16 | 291097 | chr8 | NT_008046.16 | 51103248-51394345 | 502 | 181 | MIRb (36) | AT_rich (29) | L2a (20) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 2 | 484030 | chrX | NT_011669.17 | 4597559-5081589 | LOC100129144 | zinc_finger_protein_681 |
| LOC100288853 | ||||||
| 4 | 391733 | chrX | NT_011651.17 | 8876031-9267764 | BA345E19.2 | dachshund_homolog_2_isoform_c |
| 5 | 378671 | chr11 | NT_009237.18 | 50309325-50687996 | LOC646813 | DEAH_(Asp-Glu-Ala-His)_box_polypeptide_9_pseudogene |
| 7 | 340581 | chr20 | NT_011362.10 | 11543138-11883719 | PTPRT | receptor-type_tyrosine-protein_phosphatase_T_isoform_2_precursor |