| Enzyme: | StuI | Longest uncut segments |
| Specificity: | AGGCCT | Repeats in uncut segments |
| Number of sites: | 800355 | Genes in uncut segments |
| Mean distance between sites: | 3575 base pairs | |
| Standard deviation: | 4249 base pairs | |
| Site density | 279.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 503839 | chr15 | NT_037852.6 | 1381801-1885640 | 2.62 % in | 38 repeats | 0.00 % in | 0 genes |
| 2 | 403369 | chr6 | NT_167244.1 | 2359950-2763319 | 0.05 % in | 2 repeats | 0.00 % in | 0 genes |
| 3 | 246174 | chr6 | NT_167244.1 | 2009351-2255525 | 0.96 % in | 11 repeats | 1.79 % in | 2 genes |
| 4 | 210833 | chr6 | NT_167244.1 | 4388232-4599065 | 1.37 % in | 10 repeats | 0.00 % in | 0 genes |
| 5 | 190259 | chr6 | NT_167248.1 | 521524-711783 | 8.39 % in | 40 repeats | 2.13 % in | 3 genes |
| 6 | 183168 | chr6 | NT_167244.1 | 3173954-3357122 | 2.19 % in | 29 repeats | 3.94 % in | 2 genes |
| 7 | 181837 | chr6 | NT_167244.1 | 3789125-3970962 | 0.44 % in | 6 repeats | 0.00 % in | 0 genes |
| 8 | 173601 | chr6 | NT_167247.1 | 4422039-4595640 | 0.77 % in | 4 repeats | 100.00 % in | 1 genes |
| 9 | 169182 | chr6 | NT_167249.1 | 2138450-2307632 | 2.08 % in | 16 repeats | 0.00 % in | 0 genes |
| 10 | 165536 | chr6 | NT_167247.1 | 1561185-1726721 | 0.61 % in | 3 repeats | 0.00 % in | 0 genes |
| 11 | 163868 | chr9 | NT_008470.19 | 21688033-21851901 | 4.22 % in | 24 repeats | 0.00 % in | 0 genes |
| 12 | 151501 | chr6 | NT_167244.1 | 2894514-3046015 | 2.05 % in | 19 repeats | 0.00 % in | 0 genes |
| 13 | 124786 | chr1 | NT_167185.1 | 19738-144524 | 11.94 % in | 46 repeats | 0.00 % in | 0 genes |
| 14 | 124613 | chr6 | NT_167244.1 | 587363-711976 | 7.54 % in | 35 repeats | 0.00 % in | 0 genes |
| 15 | 123351 | chr6 | NT_167245.1 | 2602338-2725689 | 3.84 % in | 11 repeats | 0.00 % in | 0 genes |
| 16 | 122421 | chr7 | NT_007933.15 | 68169665-68292086 | 6.56 % in | 29 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 503839 | chr15 | NT_037852.6 | 1381801-1885640 | 38 | 21 | Tigger2 (6) | L1MDa (6) | MIRb (2) | |
| 2 | 403369 | chr6 | NT_167244.1 | 2359950-2763319 | 2 | 2 | L1MEg (1) | AluSp (1) | ||
| 3 | 246174 | chr6 | NT_167244.1 | 2009351-2255525 | 11 | 11 | MIRb (1) | MIR (1) | MER5A1 (1) | |
| 4 | 210833 | chr6 | NT_167244.1 | 4388232-4599065 | 10 | 8 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 5 | 190259 | chr6 | NT_167248.1 | 521524-711783 | 40 | 26 | AT_rich (7) | L2c (3) | L2b (3) | |
| 6 | 183168 | chr6 | NT_167244.1 | 3173954-3357122 | 29 | 17 | AluSx (6) | L1MB3 (4) | GC_rich (3) | |
| 7 | 181837 | chr6 | NT_167244.1 | 3789125-3970962 | 6 | 6 | MLT1H-int (1) | MIR (1) | MER52D (1) | |
| 8 | 173601 | chr6 | NT_167247.1 | 4422039-4595640 | 4 | 4 | (TTAAA)n (1) | MER11A (1) | AluSg/x (1) | |
| 9 | 169182 | chr6 | NT_167249.1 | 2138450-2307632 | 16 | 6 | Charlie2b (6) | AluSx (4) | L1MB8 (3) | |
| 10 | 165536 | chr6 | NT_167247.1 | 1561185-1726721 | 3 | 3 | MIRc (1) | L1MC3 (1) | A-rich (1) | |
| 11 | 163868 | chr9 | NT_008470.19 | 21688033-21851901 | 24 | 17 | MIRb (2) | MER5B (2) | LTR67B (2) | |
| 12 | 151501 | chr6 | NT_167244.1 | 2894514-3046015 | 19 | 9 | L1MC5 (6) | L2c (3) | AluY (2) | |
| 13 | 124786 | chr1 | NT_167185.1 | 19738-144524 | 46 | 28 | L1PB1 (5) | L2a (4) | AluY (3) | |
| 14 | 124613 | chr6 | NT_167244.1 | 587363-711976 | 35 | 25 | L2c (3) | L2b (3) | L1MA9 (3) | |
| 15 | 123351 | chr6 | NT_167245.1 | 2602338-2725689 | 11 | 9 | MLT1N2 (2) | L2 (2) | MLT1E2 (1) | |
| 16 | 122421 | chr7 | NT_007933.15 | 68169665-68292086 | 29 | 21 | AluSx (4) | L1PB1 (3) | L1MB7 (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 246174 | chr6 | NT_167244.1 | 2009351-2255525 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 190259 | chr6 | NT_167248.1 | 521524-711783 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| OR10C1 | olfactory_receptor_10C1 | |||||
| 6 | 183168 | chr6 | NT_167244.1 | 3173954-3357122 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 173601 | chr6 | NT_167247.1 | 4422039-4595640 | LOC100507722 | hypothetical_protein_LOC100507722 |