| Enzyme: | EcoT38I | Longest uncut segments |
| Specificity: | GRGCYC | Repeats in uncut segments |
| Number of sites: | 2330338 | Genes in uncut segments |
| Mean distance between sites: | 1227 base pairs | |
| Standard deviation: | 1701 base pairs | |
| Site density | 814.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490935 | chr15 | NT_037852.6 | 1397012-1887947 | 0.27 % in | 9 repeats | 0.00 % in | 0 genes |
| 2 | 401904 | chr6 | NT_167244.1 | 2359617-2761521 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 213597 | chr6 | NT_167244.1 | 4384459-4598056 | 1.83 % in | 11 repeats | 0.00 % in | 0 genes |
| 4 | 184245 | chr6 | NT_167244.1 | 3787380-3971625 | 0.99 % in | 10 repeats | 0.06 % in | 1 genes |
| 5 | 175598 | chr6 | NT_167244.1 | 3180070-3355668 | 0.23 % in | 5 repeats | 0.09 % in | 1 genes |
| 6 | 174670 | chr6 | NT_167247.1 | 4421944-4596614 | 1.07 % in | 6 repeats | 100.00 % in | 1 genes |
| 7 | 168522 | chr6 | NT_167249.1 | 2137109-2305631 | 1.69 % in | 11 repeats | 0.00 % in | 0 genes |
| 8 | 166459 | chr6 | NT_167247.1 | 1562927-1729386 | 0.60 % in | 6 repeats | 0.02 % in | 1 genes |
| 9 | 159612 | chr6 | NT_167248.1 | 521723-681335 | 0.19 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 156069 | chr6 | NT_167244.1 | 2008868-2164937 | 0.18 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 151927 | chr9 | NT_008470.19 | 21691699-21843626 | 0.78 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 144045 | chr6 | NT_167244.1 | 2893724-3037769 | 0.48 % in | 6 repeats | 0.00 % in | 0 genes |
| 13 | 119119 | chr6 | NT_167245.1 | 2604987-2724106 | 1.27 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 116804 | chr6 | NT_167247.1 | 1175457-1292261 | 1.88 % in | 3 repeats | 0.00 % in | 0 genes |
| 15 | 115061 | chr6 | NT_167246.1 | 3260330-3375391 | 0.56 % in | 4 repeats | 0.00 % in | 0 genes |
| 16 | 110846 | chr6 | NT_167245.1 | 137961-248807 | 2.01 % in | 10 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490935 | chr15 | NT_037852.6 | 1397012-1887947 | 9 | 9 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 401904 | chr6 | NT_167244.1 | 2359617-2761521 | 1 | 1 | AluSp (1) | |||
| 3 | 213597 | chr6 | NT_167244.1 | 4384459-4598056 | 11 | 8 | MER57-int (3) | AluY (2) | (TTTTA)n (1) | |
| 4 | 184245 | chr6 | NT_167244.1 | 3787380-3971625 | 10 | 9 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 175598 | chr6 | NT_167244.1 | 3180070-3355668 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 174670 | chr6 | NT_167247.1 | 4421944-4596614 | 6 | 6 | (TTAAA)n (1) | MLT1J (1) | MER11A (1) | |
| 7 | 168522 | chr6 | NT_167249.1 | 2137109-2305631 | 11 | 7 | L1MB8 (3) | AluSx (3) | MIR (1) | |
| 8 | 166459 | chr6 | NT_167247.1 | 1562927-1729386 | 6 | 4 | MIR (2) | L1MEe (2) | (GGAA)n (1) | |
| 9 | 159612 | chr6 | NT_167248.1 | 521723-681335 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 156069 | chr6 | NT_167244.1 | 2008868-2164937 | 2 | 2 | MIRb (1) | MIR (1) | ||
| 11 | 151927 | chr9 | NT_008470.19 | 21691699-21843626 | 5 | 4 | LTR67B (2) | MSTA (1) | MIR3 (1) | |
| 12 | 144045 | chr6 | NT_167244.1 | 2893724-3037769 | 6 | 6 | (TCC)n (1) | L1MC5 (1) | AluY (1) | |
| 13 | 119119 | chr6 | NT_167245.1 | 2604987-2724106 | 4 | 4 | MLT1E2 (1) | MER5A1 (1) | L2a (1) | |
| 14 | 116804 | chr6 | NT_167247.1 | 1175457-1292261 | 3 | 2 | ERV3-16A3_I-int (2) | LTR16B2 (1) | ||
| 15 | 115061 | chr6 | NT_167246.1 | 3260330-3375391 | 4 | 3 | MIRb (2) | MIR3 (1) | AluSx (1) | |
| 16 | 110846 | chr6 | NT_167245.1 | 137961-248807 | 10 | 9 | L2c (2) | (TTTC)n (1) | MLT1F (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 184245 | chr6 | NT_167244.1 | 3787380-3971625 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 175598 | chr6 | NT_167244.1 | 3180070-3355668 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 174670 | chr6 | NT_167247.1 | 4421944-4596614 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166459 | chr6 | NT_167247.1 | 1562927-1729386 | LOC100421582 | tripartite_motif-containing_protein_26 |