| Enzyme: | AleI | Longest uncut segments |
| Specificity: | CACNNNNGTG | Repeats in uncut segments |
| Number of sites: | 534287 | Genes in uncut segments |
| Mean distance between sites: | 5355 base pairs | |
| Standard deviation: | 6183 base pairs | |
| Site density | 186.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 497514 | chr15 | NT_037852.6 | 1394349-1891863 | 1.07 % in | 23 repeats | 0.00 % in | 0 genes |
| 2 | 405647 | chr6 | NT_167244.1 | 2359092-2764739 | 0.31 % in | 6 repeats | 0.00 % in | 0 genes |
| 3 | 212165 | chr6 | NT_167244.1 | 4387571-4599736 | 1.79 % in | 12 repeats | 0.00 % in | 0 genes |
| 4 | 184935 | chr6 | NT_167244.1 | 3788289-3973224 | 1.55 % in | 17 repeats | 0.00 % in | 0 genes |
| 5 | 183765 | chr6 | NT_167244.1 | 3174447-3358212 | 2.65 % in | 30 repeats | 4.25 % in | 2 genes |
| 6 | 176468 | chr6 | NT_167247.1 | 4418264-4594732 | 0.69 % in | 7 repeats | 100.00 % in | 1 genes |
| 7 | 171279 | chr6 | NT_167247.1 | 1556597-1727876 | 2.57 % in | 22 repeats | 3.71 % in | 1 genes |
| 8 | 169418 | chr6 | NT_167249.1 | 2134662-2304080 | 1.81 % in | 16 repeats | 0.00 % in | 0 genes |
| 9 | 168062 | chr6 | NT_167245.1 | 98389-266451 | 23.71 % in | 127 repeats | 0.00 % in | 0 genes |
| 10 | 162763 | chr7 | NT_023603.5 | 34135-196898 | 100.00 % in | 4 repeats | 0.00 % in | 0 genes |
| 11 | 162198 | chr6 | NT_167248.1 | 521447-683645 | 1.78 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 160217 | chr6 | NT_167244.1 | 2888000-3048217 | 5.36 % in | 45 repeats | 0.00 % in | 0 genes |
| 13 | 153506 | chr9 | NT_008470.19 | 21691301-21844807 | 1.09 % in | 7 repeats | 0.00 % in | 0 genes |
| 14 | 143437 | chrY | NT_011875.12 | 8491489-8634926 | 65.09 % in | 6 repeats | 0.00 % in | 0 genes |
| 15 | 134688 | chr6 | NT_167246.1 | 3245186-3379874 | 5.98 % in | 50 repeats | 0.00 % in | 0 genes |
| 16 | 127149 | chr6 | NT_167245.1 | 2600436-2727585 | 5.72 % in | 20 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 497514 | chr15 | NT_037852.6 | 1394349-1891863 | 23 | 19 | L2a (3) | L1MDa (2) | L1M5 (2) | |
| 2 | 405647 | chr6 | NT_167244.1 | 2359092-2764739 | 6 | 6 | LTR84b (1) | L4 (1) | L1MEg (1) | |
| 3 | 212165 | chr6 | NT_167244.1 | 4387571-4599736 | 12 | 10 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 184935 | chr6 | NT_167244.1 | 3788289-3973224 | 17 | 14 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 5 | 183765 | chr6 | NT_167244.1 | 3174447-3358212 | 30 | 16 | AluSx (6) | L1MB3 (4) | GC_rich (3) | |
| 6 | 176468 | chr6 | NT_167247.1 | 4418264-4594732 | 7 | 7 | MIRb (1) | MIR (1) | MER11A (1) | |
| 7 | 171279 | chr6 | NT_167247.1 | 1556597-1727876 | 22 | 17 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 8 | 169418 | chr6 | NT_167249.1 | 2134662-2304080 | 16 | 9 | AluSx (4) | L1MB8 (3) | MLT1A (2) | |
| 9 | 168062 | chr6 | NT_167245.1 | 98389-266451 | 127 | 58 | AluSx (13) | AluY (11) | AluSg (6) | |
| 10 | 162763 | chr7 | NT_023603.5 | 34135-196898 | 4 | 2 | L1PA2 (2) | ALR/Alpha (2) | ||
| 11 | 162198 | chr6 | NT_167248.1 | 521447-683645 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 160217 | chr6 | NT_167244.1 | 2888000-3048217 | 45 | 21 | L1MC5 (6) | AluY (5) | AluSc (4) | |
| 13 | 153506 | chr9 | NT_008470.19 | 21691301-21844807 | 7 | 5 | LTR67B (2) | L2 (2) | MSTA (1) | |
| 14 | 143437 | chrY | NT_011875.12 | 8491489-8634926 | 6 | 2 | LTR12B (5) | LTR12D (1) | ||
| 15 | 134688 | chr6 | NT_167246.1 | 3245186-3379874 | 50 | 27 | AluSx (11) | MIRb (3) | L1MC5 (3) | |
| 16 | 127149 | chr6 | NT_167245.1 | 2600436-2727585 | 20 | 16 | Tigger1 (2) | MLT1N2 (2) | MER21C (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 183765 | chr6 | NT_167244.1 | 3174447-3358212 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 176468 | chr6 | NT_167247.1 | 4418264-4594732 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 171279 | chr6 | NT_167247.1 | 1556597-1727876 | LOC100421582 | tripartite_motif-containing_protein_26 |