| Enzyme: | BspMI | Longest uncut segments |
| Specificity: | ACCTGC | Repeats in uncut segments |
| Number of sites: | 1366056 | Genes in uncut segments |
| Mean distance between sites: | 2094 base pairs | |
| Standard deviation: | 2374 base pairs | |
| Site density | 477.4 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 508763 | chr15 | NT_037852.6 | 1396564-1905327 | 1.43 % in | 39 repeats | 1.96 % in | 1 genes |
| 2 | 415314 | chr6 | NT_167244.1 | 2347488-2762802 | 2.11 % in | 40 repeats | 0.00 % in | 0 genes |
| 3 | 211729 | chr6 | NT_167244.1 | 4386497-4598226 | 1.80 % in | 11 repeats | 0.00 % in | 0 genes |
| 4 | 189759 | chr6 | NT_167244.1 | 3782118-3971877 | 2.41 % in | 19 repeats | 2.83 % in | 1 genes |
| 5 | 178818 | chr6 | NT_167244.1 | 3176924-3355742 | 1.05 % in | 20 repeats | 1.85 % in | 1 genes |
| 6 | 172187 | chr6 | NT_167247.1 | 4422154-4594341 | 0.05 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 170356 | chr6 | NT_167247.1 | 1557817-1728173 | 2.09 % in | 17 repeats | 3.01 % in | 1 genes |
| 8 | 166638 | chr6 | NT_167249.1 | 2137875-2304513 | 0.73 % in | 8 repeats | 0.00 % in | 0 genes |
| 9 | 162658 | chr6 | NT_167244.1 | 2003353-2166011 | 1.74 % in | 14 repeats | 0.00 % in | 0 genes |
| 10 | 160827 | chr6 | NT_167248.1 | 521775-682602 | 0.94 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 151627 | chr9 | NT_008470.19 | 21691741-21843368 | 0.75 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 151253 | chr6 | NT_167244.1 | 2889533-3040786 | 4.42 % in | 34 repeats | 0.00 % in | 0 genes |
| 13 | 120674 | chr10 | NT_008705.16 | 38710807-38831481 | 27.74 % in | 219 repeats | 0.00 % in | 0 genes |
| 14 | 119371 | chr6 | NT_167245.1 | 2606083-2725454 | 1.42 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 116542 | chr6 | NT_167246.1 | 3259948-3376490 | 1.10 % in | 9 repeats | 0.00 % in | 0 genes |
| 16 | 116020 | chr6 | NT_167247.1 | 1176693-1292713 | 0.84 % in | 1 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 508763 | chr15 | NT_037852.6 | 1396564-1905327 | 39 | 26 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 415314 | chr6 | NT_167244.1 | 2347488-2762802 | 40 | 26 | AluJb (4) | L1ME4a (3) | AluSx (3) | |
| 3 | 211729 | chr6 | NT_167244.1 | 4386497-4598226 | 11 | 8 | MER57-int (3) | AluSx (2) | (TTTTA)n (1) | |
| 4 | 189759 | chr6 | NT_167244.1 | 3782118-3971877 | 19 | 13 | L2a (3) | MLT1H-int (2) | AT_rich (2) | |
| 5 | 178818 | chr6 | NT_167244.1 | 3176924-3355742 | 20 | 14 | GC_rich (3) | AluSx (3) | MER44B (2) | |
| 6 | 172187 | chr6 | NT_167247.1 | 4422154-4594341 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 170356 | chr6 | NT_167247.1 | 1557817-1728173 | 17 | 14 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 8 | 166638 | chr6 | NT_167249.1 | 2137875-2304513 | 8 | 4 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 9 | 162658 | chr6 | NT_167244.1 | 2003353-2166011 | 14 | 9 | AluSx (4) | FRAM (2) | AluJb (2) | |
| 10 | 160827 | chr6 | NT_167248.1 | 521775-682602 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 151627 | chr9 | NT_008470.19 | 21691741-21843368 | 4 | 3 | LTR67B (2) | MSTA (1) | L1M5 (1) | |
| 12 | 151253 | chr6 | NT_167244.1 | 2889533-3040786 | 34 | 16 | L1MC5 (6) | AluY (5) | AluSc (3) | |
| 13 | 120674 | chr10 | NT_008705.16 | 38710807-38831481 | 219 | 31 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 14 | 119371 | chr6 | NT_167245.1 | 2606083-2725454 | 5 | 4 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 116542 | chr6 | NT_167246.1 | 3259948-3376490 | 9 | 6 | AluSx (3) | MIRb (2) | (TTA)n (1) | |
| 16 | 116020 | chr6 | NT_167247.1 | 1176693-1292713 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 508763 | chr15 | NT_037852.6 | 1396564-1905327 | LOC100418897 | |
| 4 | 189759 | chr6 | NT_167244.1 | 3782118-3971877 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 178818 | chr6 | NT_167244.1 | 3176924-3355742 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 172187 | chr6 | NT_167247.1 | 4422154-4594341 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 170356 | chr6 | NT_167247.1 | 1557817-1728173 | LOC100421582 | tripartite_motif-containing_protein_26 |