| Enzyme: | RceI | Longest uncut segments |
| Specificity: | CATCGAC | Repeats in uncut segments |
| Number of sites: | 29094 | Genes in uncut segments |
| Mean distance between sites: | 98348 base pairs | |
| Standard deviation: | 106383 base pairs | |
| Site density | 10.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 1507960 | chr19 | NT_011295.11 | 11418555-12926515 | 65.38 % in | 2908 repeats | 45.43 % in | 35 genes |
| 2 | 1288165 | chr14 | NT_026437.12 | 27012405-28300570 | 59.64 % in | 1949 repeats | 0.95 % in | 2 genes |
| 3 | 1134000 | chr15 | NT_010194.17 | 25106033-26240033 | 56.78 % in | 1688 repeats | 53.38 % in | 1 genes |
| 4 | 1118643 | chr1 | NT_004610.19 | 14747060-15865703 | 61.75 % in | 3352 repeats | 67.40 % in | 26 genes |
| 5 | 1116269 | chrX | NT_011786.16 | 20433652-21549921 | 58.71 % in | 2138 repeats | 0.77 % in | 3 genes |
| 6 | 1041990 | chr4 | NT_022778.16 | 5550527-6592517 | 50.34 % in | 1581 repeats | 27.86 % in | 4 genes |
| 7 | 959804 | chr9 | NT_008470.19 | 27669027-28628831 | 51.54 % in | 2032 repeats | 56.54 % in | 12 genes |
| 8 | 928849 | chr7 | NT_007933.15 | 16063870-16992719 | 43.33 % in | 1412 repeats | 100.00 % in | 1 genes |
| 9 | 917071 | chr1 | NT_032977.9 | 48598329-49515400 | 52.84 % in | 1435 repeats | 0.00 % in | 0 genes |
| 10 | 898820 | chr3 | NT_005612.16 | 3539210-4438030 | 44.74 % in | 1221 repeats | 0.00 % in | 0 genes |
| 11 | 893067 | chr1 | NT_032977.9 | 21120879-22013946 | 64.26 % in | 2139 repeats | 0.00 % in | 0 genes |
| 12 | 884569 | chr4 | NT_022778.16 | 8359228-9243797 | 56.83 % in | 1587 repeats | 0.00 % in | 0 genes |
| 13 | 878732 | chr7 | NT_007933.15 | 14757075-15635807 | 53.38 % in | 1785 repeats | 0.00 % in | 0 genes |
| 14 | 871905 | chr1 | NT_032977.9 | 40252450-41124355 | 49.41 % in | 1560 repeats | 0.00 % in | 0 genes |
| 15 | 868982 | chr1 | NT_032977.9 | 51976237-52845219 | 37.64 % in | 1367 repeats | 0.00 % in | 0 genes |
| 16 | 868183 | chr6 | NT_025741.15 | 34506250-35374433 | 45.90 % in | 1352 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 1507960 | chr19 | NT_011295.11 | 11418555-12926515 | 2908 | 232 | AluSx (274) | AluSg (188) | L1MB2 (156) | |
| 2 | 1288165 | chr14 | NT_026437.12 | 27012405-28300570 | 1949 | 383 | AT_rich (198) | L2a (59) | MIR (56) | |
| 3 | 1134000 | chr15 | NT_010194.17 | 25106033-26240033 | 1688 | 306 | AT_rich (112) | L2a (68) | MIR (61) | |
| 4 | 1118643 | chr1 | NT_004610.19 | 14747060-15865703 | 3352 | 285 | AluSx (459) | AluY (210) | AluJb (195) | |
| 5 | 1116269 | chrX | NT_011786.16 | 20433652-21549921 | 2138 | 342 | MIRb (111) | MIR (106) | AluSx (98) | |
| 6 | 1041990 | chr4 | NT_022778.16 | 5550527-6592517 | 1581 | 345 | AT_rich (230) | L2a (51) | (TA)n (50) | |
| 7 | 959804 | chr9 | NT_008470.19 | 27669027-28628831 | 2032 | 314 | AluSx (160) | AluY (92) | AT_rich (87) | |
| 8 | 928849 | chr7 | NT_007933.15 | 16063870-16992719 | 1412 | 275 | AT_rich (125) | MIRb (77) | MIR (61) | |
| 9 | 917071 | chr1 | NT_032977.9 | 48598329-49515400 | 1435 | 308 | AT_rich (133) | MIRb (69) | MIR (61) | |
| 10 | 898820 | chr3 | NT_005612.16 | 3539210-4438030 | 1221 | 287 | AT_rich (123) | MIR (48) | MIRb (47) | |
| 11 | 893067 | chr1 | NT_032977.9 | 21120879-22013946 | 2139 | 314 | AluSx (241) | MIRb (104) | AT_rich (89) | |
| 12 | 884569 | chr4 | NT_022778.16 | 8359228-9243797 | 1587 | 329 | AT_rich (109) | AluSx (72) | L2a (70) | |
| 13 | 878732 | chr7 | NT_007933.15 | 14757075-15635807 | 1785 | 304 | AluSx (189) | AT_rich (86) | AluJo (84) | |
| 14 | 871905 | chr1 | NT_032977.9 | 40252450-41124355 | 1560 | 305 | AT_rich (146) | AluSx (111) | MIRb (65) | |
| 15 | 868982 | chr1 | NT_032977.9 | 51976237-52845219 | 1367 | 266 | AT_rich (145) | MIRb (84) | AluSx (83) | |
| 16 | 868183 | chr6 | NT_025741.15 | 34506250-35374433 | 1352 | 285 | AT_rich (88) | MIRb (74) | AluSx (73) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 1507960 | chr19 | NT_011295.11 | 11418555-12926515 | LOC100421696 | zinc_finger_protein_90 |
| RPS16P10 | ||||||
| ZNF486 | zinc_finger_protein_486 | |||||
| LOC100419841 | ||||||
| LOC100421704 | ||||||
| LOC284441 | ||||||
| LOC100129265 | ||||||
| LOC100421705 | ||||||
| LOC100131306 | ||||||
| LOC100288623 | microRNA_1270-2 | |||||
| LOC100421706 | microRNA:hsa-mir-1270 | |||||
| LOC100421697 | ||||||
| LOC100131603 | zinc_finger_protein_626_isoform_2 | |||||
| VN1R79P | ||||||
| LOC100421698 | ||||||
| LOC100418986 | ||||||
| LOC100418987 | ||||||
| LOC100418988 | ||||||
| LOC100418989 | ||||||
| LOC100418990 | ||||||
| LOC100418991 | ||||||
| LOC100418992 | ||||||
| LOC100418993 | ||||||
| ZNF85 | zinc_finger_protein_85 | |||||
| KRT18P40 | ||||||
| ZNF430 | zinc_finger_protein_430_isoform_2 | |||||
| VN1R80P | ||||||
| VN1R81P | zinc_finger_protein_714 | |||||
| RPL7AP10 | zinc_finger_protein_431 | |||||
| VN1R82P | ||||||
| RPL36AP51 | ||||||
| VN1R83P | ||||||
| LOC100421707 | zinc_finger_protein_708 | |||||
| LOC100422298 | zinc_finger_protein_738 | |||||
| ZNF493 | zinc_finger_protein_493_isoform_1 | |||||
| 2 | 1288165 | chr14 | NT_026437.12 | 27012405-28300570 | LOC100506412 | hypothetical_LOC100506412 |
| RPL10L | 60S_ribosomal_protein_L10-like | |||||
| 3 | 1134000 | chr15 | NT_010194.17 | 25106033-26240033 | LOC100421430 | protein_unc-13_homolog_C |
| 4 | 1118643 | chr1 | NT_004610.19 | 14747060-15865703 | LOC100420555 | hypothetical_protein_LOC199870_isoform_5 |
| STX12 | syntaxin-12 | |||||
| PPP1R8 | nuclear_inhibitor_of_protein_phosphatase_1_isoform_gamma | |||||
| C1orf38 | protein_THEMIS2_isoform_2 | |||||
| RPA2 | replication_protein_A_32_kDa_subunit | |||||
| SMPDL3B | acid_sphingomyelinase-like_phosphodiesterase_3b_isoform_2 | |||||
| XKR8 | XK-related_protein_8 | |||||
| EYA3 | eyes_absent_homolog_3 | |||||
| LOC653566 | signal_peptidase_complex_subunit_2_homolog_pseudogene | |||||
| LOC100131223 | ||||||
| RNU7-29P | ||||||
| PTAFR | platelet-activating_factor_receptor | |||||
| DNAJC8 | dnaJ_homolog_subfamily_C_member_8 | |||||
| ATPIF1 | ATPase_inhibitor,_mitochondrial_isoform_3_precursor | |||||
| SESN2 | sestrin-2 | |||||
| MED18 | mediator_of_RNA_polymerase_II_transcription_subunit_18 | |||||
| PHACTR4 | phosphatase_and_actin_regulator_4_isoform_2 | |||||
| RCC1 | regulator_of_chromosome_condensation_isoform_c | |||||
| TRNAU1AP | tRNA_selenocysteine_1-associated_protein_1 | |||||
| SNORA16A | small_nucleolar_RNA,_H/ACA_box_16A | |||||
| RAB42 | putative_Ras-related_protein_Rab-42_isoform_2 | |||||
| TAF12 | transcription_initiation_factor_TFIID_subunit_12 | |||||
| RNU11 | RNA,_U11_small_nuclear | |||||
| GMEB1 | glucocorticoid_modulatory_element-binding_protein_1_isoform_2 | |||||
| YTHDF2 | YTH_domain_family_protein_2_isoform_2 | |||||
| OPRD1 | delta-type_opioid_receptor | |||||
| 5 | 1116269 | chrX | NT_011786.16 | 20433652-21549921 | RAC1P4 | |
| ZIC3 | zinc_finger_protein_ZIC_3 | |||||
| ZFYVE9P1 | ||||||
| 6 | 1041990 | chr4 | NT_022778.16 | 5550527-6592517 | RPS6P5 | |
| LOC401134 | hypothetical_LOC401134 | |||||
| LOC100422019 | ||||||
| LOC100507063 | hypothetical_LOC100507063 | |||||
| 7 | 959804 | chr9 | NT_008470.19 | 27669027-28628831 | LOC100506667 | hypothetical_protein_LOC100506667 |
| C9orf130 | chromosome_9_open_reading_frame_130,_transcript_variant_2 | |||||
| LOC100422232 | RAD26L_hypothetical_protein | |||||
| NCRNA00092 | non-protein_coding_RNA_92 | |||||
| LOC158435 | hypothetical_LOC158435 | |||||
| EIF4BP3 | ||||||
| HSD17B3 | testosterone_17-beta-dehydrogenase_3 | |||||
| SLC35D2 | UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose_transporter | |||||
| LOC100421693 | zinc_finger_protein_367 | |||||
| HABP4 | intracellular_hyaluronan-binding_protein_4 | |||||
| LOC100507364 | hypothetical_LOC100507364 | |||||
| C9orf21 | hypothetical_protein_LOC195827 | |||||
| 8 | 928849 | chr7 | NT_007933.15 | 16063870-16992719 | LOC100421387 | ribosomal_protein_L13a_pseudogene_17 |