| Enzyme: | Hpy99I | Longest uncut segments |
| Specificity: | CGWCG | Repeats in uncut segments |
| Number of sites: | 154311 | Genes in uncut segments |
| Mean distance between sites: | 18542 base pairs | |
| Standard deviation: | 30957 base pairs | |
| Site density | 53.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 612207 | chr6 | NT_025741.15 | 45320024-45932231 | 59.72 % in | 1009 repeats | 0.09 % in | 1 genes |
| 2 | 545598 | chr15 | NT_037852.6 | 1359917-1905515 | 5.95 % in | 118 repeats | 3.12 % in | 2 genes |
| 3 | 543864 | chr2 | NT_022135.16 | 6461464-7005328 | 64.37 % in | 827 repeats | 0.00 % in | 0 genes |
| 4 | 524935 | chr4 | NT_016297.16 | 593687-1118622 | 51.33 % in | 849 repeats | 0.00 % in | 0 genes |
| 5 | 520521 | chr14 | NT_026437.12 | 10336143-10856664 | 44.95 % in | 719 repeats | 0.59 % in | 1 genes |
| 6 | 509922 | chr3 | NT_005612.16 | 67848794-68358716 | 52.86 % in | 798 repeats | 0.00 % in | 0 genes |
| 7 | 484370 | chr5 | NT_034772.6 | 13346634-13831004 | 52.27 % in | 821 repeats | 0.00 % in | 0 genes |
| 8 | 484181 | chr12 | NT_029419.12 | 48993313-49477494 | 55.49 % in | 773 repeats | 79.04 % in | 1 genes |
| 9 | 458607 | chr11 | NT_009237.18 | 40975542-41434149 | 41.17 % in | 788 repeats | 0.00 % in | 0 genes |
| 10 | 455450 | chr11 | NT_009237.18 | 36987174-37442624 | 55.32 % in | 763 repeats | 0.00 % in | 0 genes |
| 11 | 454285 | chr11 | NT_033899.8 | 7854375-8308660 | 50.25 % in | 824 repeats | 0.00 % in | 0 genes |
| 12 | 446399 | chr3 | NT_022459.15 | 16972991-17419390 | 55.69 % in | 701 repeats | 0.00 % in | 0 genes |
| 13 | 441951 | chr6 | NT_167244.1 | 2326723-2768674 | 4.91 % in | 92 repeats | 0.00 % in | 0 genes |
| 14 | 435963 | chr5 | NT_006713.15 | 34593708-35029671 | 54.53 % in | 694 repeats | 0.00 % in | 0 genes |
| 15 | 429832 | chr11 | NT_033899.8 | 9651704-10081536 | 55.17 % in | 756 repeats | 0.00 % in | 0 genes |
| 16 | 416145 | chrX | NT_011651.17 | 10759496-11175641 | 76.27 % in | 724 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 612207 | chr6 | NT_025741.15 | 45320024-45932231 | 1009 | 265 | AT_rich (103) | (TA)n (28) | L1ME1 (28) | |
| 2 | 545598 | chr15 | NT_037852.6 | 1359917-1905515 | 118 | 56 | L1MDa (10) | Tigger2 (6) | L2 (6) | |
| 3 | 543864 | chr2 | NT_022135.16 | 6461464-7005328 | 827 | 251 | AT_rich (68) | MIRb (30) | AluSx (26) | |
| 4 | 524935 | chr4 | NT_016297.16 | 593687-1118622 | 849 | 253 | AT_rich (101) | MIR (30) | L2a (26) | |
| 5 | 520521 | chr14 | NT_026437.12 | 10336143-10856664 | 719 | 201 | AT_rich (69) | L2c (30) | L2a (30) | |
| 6 | 509922 | chr3 | NT_005612.16 | 67848794-68358716 | 798 | 242 | AT_rich (83) | MIR (29) | MIRb (28) | |
| 7 | 484370 | chr5 | NT_034772.6 | 13346634-13831004 | 821 | 241 | AT_rich (104) | AluSx (29) | L1MEf (18) | |
| 8 | 484181 | chr12 | NT_029419.12 | 48993313-49477494 | 773 | 231 | AT_rich (100) | MIR (25) | L2a (23) | |
| 9 | 458607 | chr11 | NT_009237.18 | 40975542-41434149 | 788 | 199 | MIRb (60) | AT_rich (56) | MIR (52) | |
| 10 | 455450 | chr11 | NT_009237.18 | 36987174-37442624 | 763 | 227 | AT_rich (62) | L2a (35) | MIR (29) | |
| 11 | 454285 | chr11 | NT_033899.8 | 7854375-8308660 | 824 | 237 | AT_rich (71) | MIR (32) | MIRb (23) | |
| 12 | 446399 | chr3 | NT_022459.15 | 16972991-17419390 | 701 | 210 | AT_rich (95) | AluY (21) | (TA)n (18) | |
| 13 | 441951 | chr6 | NT_167244.1 | 2326723-2768674 | 92 | 45 | AluSx (8) | L1MC4a (7) | AluJb (7) | |
| 14 | 435963 | chr5 | NT_006713.15 | 34593708-35029671 | 694 | 218 | AT_rich (95) | AluSx (20) | (TA)n (16) | |
| 15 | 429832 | chr11 | NT_033899.8 | 9651704-10081536 | 756 | 214 | AT_rich (50) | L2c (47) | MIRb (43) | |
| 16 | 416145 | chrX | NT_011651.17 | 10759496-11175641 | 724 | 223 | AT_rich (49) | AluSx (25) | AluY (21) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 612207 | chr6 | NT_025741.15 | 45320024-45932231 | RPS18P10 | |
| 2 | 545598 | chr15 | NT_037852.6 | 1359917-1905515 | LOC727914 | |
| LOC100418897 | ||||||
| 5 | 520521 | chr14 | NT_026437.12 | 10336143-10856664 | LOC100506004 | hypothetical_LOC100506004 |
| 8 | 484181 | chr12 | NT_029419.12 | 48993313-49477494 | MGAT4C | alpha-1,3-mannosyl-glycoprotein_4-beta-N-acetylglucosaminyltransferase_C |