| Enzyme: | AlwNI | Longest uncut segments |
| Specificity: | CAGNNNCTG | Repeats in uncut segments |
| Number of sites: | 1391735 | Genes in uncut segments |
| Mean distance between sites: | 2055 base pairs | |
| Standard deviation: | 2447 base pairs | |
| Site density | 486.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 489153 | chr15 | NT_037852.6 | 1396286-1885439 | 0.24 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 403667 | chr6 | NT_167244.1 | 2358014-2761681 | 0.39 % in | 7 repeats | 0.00 % in | 0 genes |
| 3 | 209362 | chr6 | NT_167244.1 | 4389950-4599312 | 0.63 % in | 7 repeats | 0.00 % in | 0 genes |
| 4 | 183158 | chr6 | NT_167244.1 | 3787629-3970787 | 0.56 % in | 7 repeats | 0.00 % in | 0 genes |
| 5 | 179419 | chr6 | NT_167247.1 | 4417284-4596703 | 1.46 % in | 11 repeats | 100.00 % in | 1 genes |
| 6 | 176793 | chr6 | NT_167244.1 | 3179263-3356056 | 0.26 % in | 6 repeats | 0.54 % in | 1 genes |
| 7 | 173745 | chr6 | NT_167249.1 | 2130753-2304498 | 3.65 % in | 28 repeats | 0.00 % in | 0 genes |
| 8 | 171436 | chr6 | NT_167247.1 | 1558712-1730148 | 2.31 % in | 18 repeats | 2.47 % in | 1 genes |
| 9 | 165757 | chrY | NT_011875.12 | 8519750-8685507 | 69.74 % in | 10 repeats | 0.00 % in | 0 genes |
| 10 | 160371 | chr6 | NT_167248.1 | 521029-681400 | 0.66 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 155472 | chr6 | NT_167244.1 | 2009011-2164483 | 0.09 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 152500 | chr9 | NT_008470.19 | 21692468-21844968 | 0.68 % in | 5 repeats | 0.00 % in | 0 genes |
| 13 | 148566 | chr6 | NT_167244.1 | 2893184-3041750 | 2.28 % in | 21 repeats | 0.00 % in | 0 genes |
| 14 | 122982 | chr10 | NT_008705.16 | 38711654-38834636 | 27.24 % in | 220 repeats | 0.00 % in | 0 genes |
| 15 | 119803 | chr6 | NT_167245.1 | 2603992-2723795 | 1.57 % in | 6 repeats | 0.00 % in | 0 genes |
| 16 | 117390 | chr6 | NT_167247.1 | 1175959-1293349 | 1.45 % in | 2 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 489153 | chr15 | NT_037852.6 | 1396286-1885439 | 7 | 7 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 403667 | chr6 | NT_167244.1 | 2358014-2761681 | 7 | 5 | L4 (2) | AluJb (2) | L1ME4a (1) | |
| 3 | 209362 | chr6 | NT_167244.1 | 4389950-4599312 | 7 | 6 | AluSx (2) | L1PA15 (1) | L1ME3D (1) | |
| 4 | 183158 | chr6 | NT_167244.1 | 3787629-3970787 | 7 | 6 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 179419 | chr6 | NT_167247.1 | 4417284-4596703 | 11 | 11 | (TTAAA)n (1) | MLT1J (1) | MIRb (1) | |
| 6 | 176793 | chr6 | NT_167244.1 | 3179263-3356056 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 173745 | chr6 | NT_167249.1 | 2130753-2304498 | 28 | 15 | AluSx (5) | L1MB8 (3) | AluJo (3) | |
| 8 | 171436 | chr6 | NT_167247.1 | 1558712-1730148 | 18 | 14 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 9 | 165757 | chrY | NT_011875.12 | 8519750-8685507 | 10 | 1 | LTR12B (10) | |||
| 10 | 160371 | chr6 | NT_167248.1 | 521029-681400 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 155472 | chr6 | NT_167244.1 | 2009011-2164483 | 2 | 2 | MIRb (1) | MIR (1) | ||
| 12 | 152500 | chr9 | NT_008470.19 | 21692468-21844968 | 5 | 4 | L2 (2) | MIR3 (1) | LTR67B (1) | |
| 13 | 148566 | chr6 | NT_167244.1 | 2893184-3041750 | 21 | 10 | L1MC5 (6) | AluY (3) | AluSc (3) | |
| 14 | 122982 | chr10 | NT_008705.16 | 38711654-38834636 | 220 | 33 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 15 | 119803 | chr6 | NT_167245.1 | 2603992-2723795 | 6 | 6 | MLT1N2 (1) | MER5B (1) | MER5A1 (1) | |
| 16 | 117390 | chr6 | NT_167247.1 | 1175959-1293349 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 179419 | chr6 | NT_167247.1 | 4417284-4596703 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 176793 | chr6 | NT_167244.1 | 3179263-3356056 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 8 | 171436 | chr6 | NT_167247.1 | 1558712-1730148 | LOC100421582 | tripartite_motif-containing_protein_26 |