| Enzyme: | BspHI | Longest uncut segments |
| Specificity: | TCATGA | Repeats in uncut segments |
| Number of sites: | 968443 | Genes in uncut segments |
| Mean distance between sites: | 2954 base pairs | |
| Standard deviation: | 3161 base pairs | |
| Site density | 338.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494987 | chr15 | NT_037852.6 | 1393184-1888171 | 0.75 % in | 16 repeats | 0.00 % in | 0 genes |
| 2 | 404213 | chr6 | NT_167244.1 | 2358104-2762317 | 0.37 % in | 7 repeats | 0.00 % in | 0 genes |
| 3 | 254652 | chr6 | NT_167244.1 | 2002968-2257620 | 2.56 % in | 29 repeats | 3.71 % in | 3 genes |
| 4 | 208932 | chr6 | NT_167244.1 | 4388976-4597908 | 0.51 % in | 6 repeats | 0.00 % in | 0 genes |
| 5 | 187630 | chr6 | NT_167244.1 | 3783374-3971004 | 1.92 % in | 15 repeats | 2.19 % in | 1 genes |
| 6 | 184628 | chr6 | NT_167244.1 | 3174160-3358788 | 2.71 % in | 32 repeats | 4.70 % in | 2 genes |
| 7 | 180091 | chr6 | NT_167247.1 | 4416822-4596913 | 1.45 % in | 11 repeats | 99.84 % in | 1 genes |
| 8 | 167141 | chr6 | NT_167249.1 | 2138115-2305256 | 0.99 % in | 8 repeats | 0.00 % in | 0 genes |
| 9 | 165141 | chr6 | NT_167247.1 | 1561950-1727091 | 0.16 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 163490 | chr6 | NT_167248.1 | 520727-684217 | 2.56 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 161313 | chr7 | NT_023603.5 | 33285-194598 | 100.00 % in | 3 repeats | 0.00 % in | 0 genes |
| 12 | 154391 | chr9 | NT_008470.19 | 21691331-21845722 | 1.27 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 148228 | chr6 | NT_167244.1 | 2894629-3042857 | 1.97 % in | 18 repeats | 0.00 % in | 0 genes |
| 14 | 134475 | chr6 | NT_167245.1 | 127203-261678 | 10.20 % in | 54 repeats | 0.00 % in | 0 genes |
| 15 | 127961 | chr6 | NT_167245.1 | 2597361-2725322 | 6.96 % in | 24 repeats | 0.00 % in | 0 genes |
| 16 | 126314 | chr1 | NT_004350.19 | 2049154-2175468 | 3.62 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494987 | chr15 | NT_037852.6 | 1393184-1888171 | 16 | 13 | L1MDa (3) | L2a (2) | (TA)n (1) | |
| 2 | 404213 | chr6 | NT_167244.1 | 2358104-2762317 | 7 | 5 | L4 (2) | AluJb (2) | L1ME4a (1) | |
| 3 | 254652 | chr6 | NT_167244.1 | 2002968-2257620 | 29 | 20 | AluSx (5) | AluJb (3) | MIRb (2) | |
| 4 | 208932 | chr6 | NT_167244.1 | 4388976-4597908 | 6 | 5 | MER57-int (2) | (TTCC)n (1) | AluY (1) | |
| 5 | 187630 | chr6 | NT_167244.1 | 3783374-3971004 | 15 | 10 | L2a (3) | AT_rich (2) | AluSc (2) | |
| 6 | 184628 | chr6 | NT_167244.1 | 3174160-3358788 | 32 | 18 | AluSx (6) | L1MB3 (4) | GC_rich (3) | |
| 7 | 180091 | chr6 | NT_167247.1 | 4416822-4596913 | 11 | 11 | (TTAAA)n (1) | MLT1J (1) | MIRb (1) | |
| 8 | 167141 | chr6 | NT_167249.1 | 2138115-2305256 | 8 | 4 | L1MB8 (3) | AluSx (3) | Charlie2b (1) | |
| 9 | 165141 | chr6 | NT_167247.1 | 1561950-1727091 | 2 | 2 | L1MC3 (1) | A-rich (1) | ||
| 10 | 163490 | chr6 | NT_167248.1 | 520727-684217 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 161313 | chr7 | NT_023603.5 | 33285-194598 | 3 | 2 | L1PA2 (2) | ALR/Alpha (1) | ||
| 12 | 154391 | chr9 | NT_008470.19 | 21691331-21845722 | 8 | 6 | LTR67B (2) | L2 (2) | MSTA (1) | |
| 13 | 148228 | chr6 | NT_167244.1 | 2894629-3042857 | 18 | 9 | L1MC5 (6) | L2c (2) | AluY (2) | |
| 14 | 134475 | chr6 | NT_167245.1 | 127203-261678 | 54 | 37 | AluY (5) | AluSx (5) | L2c (3) | |
| 15 | 127961 | chr6 | NT_167245.1 | 2597361-2725322 | 24 | 19 | MER21-int (3) | MLT1N2 (2) | MER21C (2) | |
| 16 | 126314 | chr1 | NT_004350.19 | 2049154-2175468 | 16 | 10 | L1MEf (4) | L1MB3 (3) | AluSg (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 254652 | chr6 | NT_167244.1 | 2002968-2257620 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 187630 | chr6 | NT_167244.1 | 3783374-3971004 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 184628 | chr6 | NT_167244.1 | 3174160-3358788 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 180091 | chr6 | NT_167247.1 | 4416822-4596913 | LOC100507722 | hypothetical_protein_LOC100507722 |