| Enzyme: | ApyPI | Longest uncut segments |
| Specificity: | ATCGAC | Repeats in uncut segments |
| Number of sites: | 95027 | Genes in uncut segments |
| Mean distance between sites: | 30110 base pairs | |
| Standard deviation: | 31599 base pairs | |
| Site density | 33.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 511948 | chr15 | NT_037852.6 | 1392123-1904071 | 1.89 % in | 45 repeats | 1.95 % in | 1 genes |
| 2 | 459915 | chr6 | NT_167244.1 | 2328814-2788729 | 6.70 % in | 124 repeats | 3.01 % in | 2 genes |
| 3 | 417721 | chrY | NT_011875.12 | 8386531-8804252 | 82.21 % in | 197 repeats | 0.34 % in | 2 genes |
| 4 | 400458 | chr12 | NT_029419.12 | 8134560-8535018 | 49.16 % in | 824 repeats | 62.90 % in | 3 genes |
| 5 | 397052 | chr6 | NT_167244.1 | 4204488-4601540 | 20.09 % in | 204 repeats | 11.30 % in | 6 genes |
| 6 | 378953 | chr6 | NT_167247.1 | 4254355-4633308 | 21.96 % in | 267 repeats | 67.64 % in | 9 genes |
| 7 | 361165 | chr6 | NT_007592.15 | 56455822-56816987 | 48.13 % in | 691 repeats | 93.09 % in | 3 genes |
| 8 | 339995 | chr3 | NT_005612.16 | 6785740-7125735 | 39.68 % in | 447 repeats | 86.37 % in | 4 genes |
| 9 | 338895 | chr15 | NT_010194.17 | 14556648-14895543 | 40.84 % in | 647 repeats | 0.00 % in | 0 genes |
| 10 | 329839 | chr1 | NT_032977.9 | 56018867-56348706 | 54.07 % in | 595 repeats | 0.00 % in | 0 genes |
| 11 | 325622 | chr4 | NT_016354.19 | 24146883-24472505 | 60.99 % in | 756 repeats | 0.00 % in | 0 genes |
| 12 | 319770 | chr3 | NT_005612.16 | 85005975-85325745 | 62.21 % in | 556 repeats | 0.00 % in | 0 genes |
| 13 | 313468 | chr6 | NT_007299.13 | 24229244-24542712 | 49.92 % in | 592 repeats | 0.00 % in | 0 genes |
| 14 | 312945 | chr14 | NT_026437.12 | 16267292-16580237 | 57.45 % in | 818 repeats | 0.00 % in | 0 genes |
| 15 | 311587 | chr3 | NT_022517.18 | 12061899-12373486 | 45.17 % in | 616 repeats | 0.00 % in | 0 genes |
| 16 | 311375 | chr5 | NT_006713.15 | 39357945-39669320 | 48.99 % in | 450 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 511948 | chr15 | NT_037852.6 | 1392123-1904071 | 45 | 29 | AT_rich (5) | L1MDa (4) | (TA)n (3) | |
| 2 | 459915 | chr6 | NT_167244.1 | 2328814-2788729 | 124 | 57 | AluJo (8) | L1MC4a (7) | AluY (7) | |
| 3 | 417721 | chrY | NT_011875.12 | 8386531-8804252 | 197 | 75 | LTR12B (17) | AT_rich (13) | AluY (11) | |
| 4 | 400458 | chr12 | NT_029419.12 | 8134560-8535018 | 824 | 194 | AT_rich (60) | AluSx (46) | AluJb (46) | |
| 5 | 397052 | chr6 | NT_167244.1 | 4204488-4601540 | 204 | 95 | L2c (10) | L1PB1 (10) | MIR (9) | |
| 6 | 378953 | chr6 | NT_167247.1 | 4254355-4633308 | 267 | 113 | MIR (12) | L2c (12) | AluSx (11) | |
| 7 | 361165 | chr6 | NT_007592.15 | 56455822-56816987 | 691 | 186 | AluSx (50) | AT_rich (45) | MIRb (35) | |
| 8 | 339995 | chr3 | NT_005612.16 | 6785740-7125735 | 447 | 154 | AT_rich (37) | AluSx (21) | MIRb (18) | |
| 9 | 338895 | chr15 | NT_010194.17 | 14556648-14895543 | 647 | 107 | AluSx (84) | AluJo (45) | AluJb (43) | |
| 10 | 329839 | chr1 | NT_032977.9 | 56018867-56348706 | 595 | 163 | AT_rich (39) | AluSx (39) | L2a (34) | |
| 11 | 325622 | chr4 | NT_016354.19 | 24146883-24472505 | 756 | 200 | AluSx (52) | AT_rich (40) | AluJo (37) | |
| 12 | 319770 | chr3 | NT_005612.16 | 85005975-85325745 | 556 | 185 | AT_rich (31) | MIRb (22) | L2a (18) | |
| 13 | 313468 | chr6 | NT_007299.13 | 24229244-24542712 | 592 | 161 | AluSx (67) | AT_rich (34) | AluJb (21) | |
| 14 | 312945 | chr14 | NT_026437.12 | 16267292-16580237 | 818 | 145 | AluSx (120) | AluJb (55) | AluY (53) | |
| 15 | 311587 | chr3 | NT_022517.18 | 12061899-12373486 | 616 | 146 | MIRb (32) | MIR3 (32) | L2c (30) | |
| 16 | 311375 | chr5 | NT_006713.15 | 39357945-39669320 | 450 | 149 | AT_rich (52) | MIR (25) | MIRb (21) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 511948 | chr15 | NT_037852.6 | 1392123-1904071 | LOC100418897 | |
| 2 | 459915 | chr6 | NT_167244.1 | 2328814-2788729 | HCG22 | HLA_complex_group_22 |
| MICB | MHC_class_I_polypeptide-related_sequence_B_precursor | |||||
| 3 | 417721 | chrY | NT_011875.12 | 8386531-8804252 | ZNF884P | |
| ZNF885P | ||||||
| 4 | 400458 | chr12 | NT_029419.12 | 8134560-8535018 | LOC400027 | hypothetical_LOC400027 |
| LOC100420898 | AT-rich_interactive_domain-containing_protein_2 | |||||
| SRSF2IP | SRSF2-interacting_protein | |||||
| 5 | 397052 | chr6 | NT_167244.1 | 4204488-4601540 | HLA-DMA | HLA_class_II_histocompatibility_antigen,_DM_alpha_chain_precursor |
| HLA-DPA1 | HLA_class_II_histocompatibility_antigen,_DP_alpha_1_chain_precursor | |||||
| RPL32P1 | HLA_class_II_histocompatibility_antigen,_DP_beta_1_chain_precursor | |||||
| HLA-DPA2 | ||||||
| COL11A2P | ||||||
| HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) | |||||
| 6 | 378953 | chr6 | NT_167247.1 | 4254355-4633308 | HLA-DMA | HLA_class_II_histocompatibility_antigen,_DM_alpha_chain_precursor |
| BRD2 | bromodomain-containing_protein_2 | |||||
| HLA-DOA | HLA_class_II_histocompatibility_antigen,_DO_alpha_chain_precursor | |||||
| HLA-DPA1 | HLA_class_II_histocompatibility_antigen,_DP_alpha_1_chain_precursor | |||||
| RPL32P1 | HLA_class_II_histocompatibility_antigen,_DP_beta_1_chain_precursor | |||||
| HLA-DPA2 | ||||||
| COL11A2P | ||||||
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||
| 7 | 361165 | chr6 | NT_007592.15 | 56455822-56816987 | LOC100506118 | bullous_pemphigoid_antigen_1-like |
| LOC100506868 | ||||||
| FTH1P15 | BEN_domain-containing_protein_6 | |||||
| 8 | 339995 | chr3 | NT_005612.16 | 6785740-7125735 | TMEM45A | transmembrane_protein_45A |
| GMFBP1 | probable_G-protein_coupled_receptor_128_precursor | |||||
| TFG | protein_TFG_isoform_1 | |||||
| LOC100421580 | target_of_Nesh-SH3_precursor | |||||