| Enzyme: | OkrAI | Longest uncut segments |
| Specificity: | GGATCC | Repeats in uncut segments |
| Number of sites: | 360918 | Genes in uncut segments |
| Mean distance between sites: | 7927 base pairs | |
| Standard deviation: | 8692 base pairs | |
| Site density | 126.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 542581 | chr15 | NT_037852.6 | 1380472-1923053 | 5.02 % in | 106 repeats | 1.84 % in | 1 genes |
| 2 | 417320 | chr6 | NT_167244.1 | 2344618-2761938 | 2.40 % in | 45 repeats | 0.00 % in | 0 genes |
| 3 | 318947 | chrY | NT_011875.12 | 8417181-8736128 | 83.26 % in | 65 repeats | 0.25 % in | 1 genes |
| 4 | 215928 | chr6 | NT_167244.1 | 4388664-4604592 | 3.22 % in | 16 repeats | 0.00 % in | 0 genes |
| 5 | 212856 | chr6 | NT_167244.1 | 3785683-3998539 | 7.76 % in | 64 repeats | 1.37 % in | 2 genes |
| 6 | 192081 | chr6 | NT_167249.1 | 2116241-2308322 | 7.83 % in | 70 repeats | 0.00 % in | 0 genes |
| 7 | 184495 | chr6 | NT_167247.1 | 4414458-4598953 | 3.04 % in | 24 repeats | 98.56 % in | 1 genes |
| 8 | 178605 | chr6 | NT_167244.1 | 3179149-3357754 | 0.83 % in | 10 repeats | 1.48 % in | 2 genes |
| 9 | 173879 | chr6 | NT_167244.1 | 2872616-3046495 | 10.92 % in | 94 repeats | 0.00 % in | 0 genes |
| 10 | 171575 | chr6 | NT_167247.1 | 1559387-1730962 | 2.13 % in | 16 repeats | 0.00 % in | 0 genes |
| 11 | 165991 | chr4 | NT_006316.16 | 391712-557703 | 5.32 % in | 59 repeats | 0.00 % in | 0 genes |
| 12 | 165936 | chr6 | NT_167248.1 | 515336-681272 | 3.69 % in | 7 repeats | 0.00 % in | 0 genes |
| 13 | 159537 | chr6 | NT_167244.1 | 2005417-2164954 | 1.53 % in | 11 repeats | 0.00 % in | 0 genes |
| 14 | 158702 | chr9 | NT_008470.19 | 21689423-21848125 | 2.84 % in | 16 repeats | 0.00 % in | 0 genes |
| 15 | 152427 | chr14 | NT_026437.12 | 16167188-16319615 | 53.97 % in | 341 repeats | 0.00 % in | 0 genes |
| 16 | 145345 | chr6 | NT_167244.1 | 1420436-1565781 | 21.25 % in | 101 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 542581 | chr15 | NT_037852.6 | 1380472-1923053 | 106 | 54 | AT_rich (8) | Tigger2 (6) | L1MDa (6) | |
| 2 | 417320 | chr6 | NT_167244.1 | 2344618-2761938 | 45 | 26 | AluJb (5) | AluSx (4) | L1ME4a (3) | |
| 3 | 318947 | chrY | NT_011875.12 | 8417181-8736128 | 65 | 29 | LTR12B (17) | L1PA16 (7) | L1ME3A (6) | |
| 4 | 215928 | chr6 | NT_167244.1 | 4388664-4604592 | 16 | 11 | HERVH-int (3) | MER57-int (2) | AluSx (2) | |
| 5 | 212856 | chr6 | NT_167244.1 | 3785683-3998539 | 64 | 44 | L2a (6) | AT_rich (4) | L1P3 (3) | |
| 6 | 192081 | chr6 | NT_167249.1 | 2116241-2308322 | 70 | 37 | AluSx (10) | Charlie2b (6) | AluJb (5) | |
| 7 | 184495 | chr6 | NT_167247.1 | 4414458-4598953 | 24 | 19 | AluSx (3) | MLT1J (2) | L2b (2) | |
| 8 | 178605 | chr6 | NT_167244.1 | 3179149-3357754 | 10 | 6 | GC_rich (3) | L2c (2) | AluSp (2) | |
| 9 | 173879 | chr6 | NT_167244.1 | 2872616-3046495 | 94 | 29 | AluSx (14) | AluJo (11) | AluY (8) | |
| 10 | 171575 | chr6 | NT_167247.1 | 1559387-1730962 | 16 | 13 | Tigger7 (2) | MIR (2) | L1MEe (2) | |
| 11 | 165991 | chr4 | NT_006316.16 | 391712-557703 | 59 | 7 | (CA)n (46) | L1M4 (7) | L1PA10 (2) | |
| 12 | 165936 | chr6 | NT_167248.1 | 515336-681272 | 7 | 7 | LTR7 (1) | L1PREC2 (1) | L1PA7 (1) | |
| 13 | 159537 | chr6 | NT_167244.1 | 2005417-2164954 | 11 | 7 | AluSx (4) | AluJb (2) | MIRb (1) | |
| 14 | 158702 | chr9 | NT_008470.19 | 21689423-21848125 | 16 | 12 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 15 | 152427 | chr14 | NT_026437.12 | 16167188-16319615 | 341 | 83 | AluSx (57) | AluJb (27) | AluY (23) | |
| 16 | 145345 | chr6 | NT_167244.1 | 1420436-1565781 | 101 | 56 | L1MA1 (7) | AluY (6) | AluSx (5) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 542581 | chr15 | NT_037852.6 | 1380472-1923053 | LOC100418897 | |
| 3 | 318947 | chrY | NT_011875.12 | 8417181-8736128 | ZNF884P | |
| 5 | 212856 | chr6 | NT_167244.1 | 3785683-3998539 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| HLA-DQA2 | HLA_class_II_histocompatibility_antigen,_DQ_alpha_2_chain_precursor | |||||
| 7 | 184495 | chr6 | NT_167247.1 | 4414458-4598953 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 178605 | chr6 | NT_167244.1 | 3179149-3357754 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||