| Enzyme: | TthHB8I | Longest uncut segments |
| Specificity: | TCGA | Repeats in uncut segments |
| Number of sites: | 1512557 | Genes in uncut segments |
| Mean distance between sites: | 1891 base pairs | |
| Standard deviation: | 2087 base pairs | |
| Site density | 528.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490815 | chr15 | NT_037852.6 | 1398404-1889219 | 0.35 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 409165 | chr6 | NT_167244.1 | 2355221-2764386 | 1.00 % in | 19 repeats | 0.00 % in | 0 genes |
| 3 | 210125 | chr6 | NT_167244.1 | 4387769-4597894 | 1.07 % in | 6 repeats | 0.00 % in | 0 genes |
| 4 | 182542 | chr6 | NT_167244.1 | 3788656-3971198 | 0.65 % in | 8 repeats | 0.00 % in | 0 genes |
| 5 | 181906 | chr6 | NT_167244.1 | 3177408-3359314 | 1.77 % in | 21 repeats | 3.27 % in | 2 genes |
| 6 | 174077 | chr6 | NT_167247.1 | 4420623-4594700 | 0.52 % in | 6 repeats | 100.00 % in | 1 genes |
| 7 | 167812 | chr6 | NT_167247.1 | 1559613-1727425 | 1.18 % in | 9 repeats | 1.99 % in | 1 genes |
| 8 | 165866 | chr6 | NT_167249.1 | 2137672-2303538 | 0.38 % in | 4 repeats | 0.00 % in | 0 genes |
| 9 | 160926 | chr6 | NT_167248.1 | 521765-682691 | 1.00 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 155728 | chr6 | NT_167244.1 | 2009167-2164895 | 0.07 % in | 1 repeats | 0.00 % in | 0 genes |
| 11 | 151349 | chr9 | NT_008470.19 | 21692324-21843673 | 0.49 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 143728 | chr6 | NT_167244.1 | 2894380-3038108 | 0.49 % in | 5 repeats | 0.00 % in | 0 genes |
| 13 | 130653 | chrY | NT_011875.12 | 8537376-8668029 | 61.67 % in | 6 repeats | 0.00 % in | 0 genes |
| 14 | 123972 | chr6 | NT_167245.1 | 2605023-2728995 | 3.52 % in | 13 repeats | 0.00 % in | 0 genes |
| 15 | 118010 | chr6 | NT_167244.1 | 1820516-1938526 | 5.83 % in | 32 repeats | 0.00 % in | 0 genes |
| 16 | 117876 | chr6 | NT_167247.1 | 1174650-1292526 | 2.55 % in | 4 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490815 | chr15 | NT_037852.6 | 1398404-1889219 | 7 | 5 | L2a (3) | (TA)n (1) | MLT1L (1) | |
| 2 | 409165 | chr6 | NT_167244.1 | 2355221-2764386 | 19 | 12 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 210125 | chr6 | NT_167244.1 | 4387769-4597894 | 6 | 5 | MER57-int (2) | (TTCC)n (1) | AluY (1) | |
| 4 | 182542 | chr6 | NT_167244.1 | 3788656-3971198 | 8 | 7 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 181906 | chr6 | NT_167244.1 | 3177408-3359314 | 21 | 14 | GC_rich (3) | AluSx (3) | LTR23 (2) | |
| 6 | 174077 | chr6 | NT_167247.1 | 4420623-4594700 | 6 | 6 | MIR (1) | MER11A (1) | L2b (1) | |
| 7 | 167812 | chr6 | NT_167247.1 | 1559613-1727425 | 9 | 8 | Tigger7 (2) | MIRc (1) | MIR (1) | |
| 8 | 165866 | chr6 | NT_167249.1 | 2137672-2303538 | 4 | 4 | L1MC4a (1) | L1MB8 (1) | AT_rich (1) | |
| 9 | 160926 | chr6 | NT_167248.1 | 521765-682691 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 155728 | chr6 | NT_167244.1 | 2009167-2164895 | 1 | 1 | MIRb (1) | |||
| 11 | 151349 | chr9 | NT_008470.19 | 21692324-21843673 | 4 | 3 | LTR67B (2) | MIR3 (1) | L1M5 (1) | |
| 12 | 143728 | chr6 | NT_167244.1 | 2894380-3038108 | 5 | 5 | L1MC5 (1) | AluY (1) | AluSp (1) | |
| 13 | 130653 | chrY | NT_011875.12 | 8537376-8668029 | 6 | 1 | LTR12B (6) | |||
| 14 | 123972 | chr6 | NT_167245.1 | 2605023-2728995 | 13 | 11 | Tigger1 (2) | L2 (2) | THE1A (1) | |
| 15 | 118010 | chr6 | NT_167244.1 | 1820516-1938526 | 32 | 17 | L2c (5) | L2a (4) | AluSx (4) | |
| 16 | 117876 | chr6 | NT_167247.1 | 1174650-1292526 | 4 | 3 | ERV3-16A3_I-int (2) | LTR16B2 (1) | L2 (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 181906 | chr6 | NT_167244.1 | 3177408-3359314 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 174077 | chr6 | NT_167247.1 | 4420623-4594700 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 167812 | chr6 | NT_167247.1 | 1559613-1727425 | LOC100421582 | tripartite_motif-containing_protein_26 |