| Enzyme: | AhdI | Longest uncut segments |
| Specificity: | GACNNNNNGTC | Repeats in uncut segments |
| Number of sites: | 271412 | Genes in uncut segments |
| Mean distance between sites: | 10542 base pairs | |
| Standard deviation: | 11087 base pairs | |
| Site density | 94.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 509008 | chr15 | NT_037852.6 | 1379583-1888591 | 3.08 % in | 51 repeats | 0.00 % in | 0 genes |
| 2 | 409016 | chr6 | NT_167244.1 | 2354695-2763711 | 0.94 % in | 18 repeats | 0.00 % in | 0 genes |
| 3 | 316333 | chrY | NT_011875.12 | 8413928-8730261 | 82.59 % in | 66 repeats | 0.25 % in | 1 genes |
| 4 | 216496 | chr6 | NT_167244.1 | 4385866-4602362 | 3.29 % in | 20 repeats | 0.00 % in | 0 genes |
| 5 | 206740 | chr6 | NT_167244.1 | 3780132-3986872 | 6.26 % in | 46 repeats | 3.56 % in | 1 genes |
| 6 | 195184 | chr6 | NT_167248.1 | 517395-712579 | 10.31 % in | 41 repeats | 2.20 % in | 3 genes |
| 7 | 189424 | chr6 | NT_167247.1 | 4410526-4599950 | 3.54 % in | 28 repeats | 97.11 % in | 2 genes |
| 8 | 188895 | chr6 | NT_167244.1 | 3175357-3364252 | 3.53 % in | 39 repeats | 6.85 % in | 2 genes |
| 9 | 177193 | chr6 | NT_167247.1 | 1556910-1734103 | 4.15 % in | 34 repeats | 0.00 % in | 0 genes |
| 10 | 175657 | chr6 | NT_167249.1 | 2131892-2307549 | 4.60 % in | 35 repeats | 0.00 % in | 0 genes |
| 11 | 170333 | chr6 | NT_167244.1 | 2883745-3054078 | 8.15 % in | 72 repeats | 0.00 % in | 0 genes |
| 12 | 169197 | chr8 | NT_167187.1 | 31411024-31580221 | 99.81 % in | 43 repeats | 0.00 % in | 0 genes |
| 13 | 169020 | chr6 | NT_167244.1 | 1997092-2166112 | 2.68 % in | 23 repeats | 0.00 % in | 0 genes |
| 14 | 162771 | chr7 | NT_023603.5 | 32659-195430 | 100.00 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 156815 | chr9 | NT_008470.19 | 21686855-21843670 | 3.05 % in | 13 repeats | 0.00 % in | 0 genes |
| 16 | 150190 | chrX | NT_011786.16 | 4261398-4411588 | 21.23 % in | 117 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 509008 | chr15 | NT_037852.6 | 1379583-1888591 | 51 | 29 | Tigger2 (6) | L1MDa (6) | Charlie5 (3) | |
| 2 | 409016 | chr6 | NT_167244.1 | 2354695-2763711 | 18 | 11 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 316333 | chrY | NT_011875.12 | 8413928-8730261 | 66 | 27 | LTR12B (17) | L1PA16 (7) | L1ME3A (6) | |
| 4 | 216496 | chr6 | NT_167244.1 | 4385866-4602362 | 20 | 13 | MER57-int (3) | AluSx (3) | HERVH-int (2) | |
| 5 | 206740 | chr6 | NT_167244.1 | 3780132-3986872 | 46 | 33 | L2a (9) | MLT1H-int (2) | L1M5 (2) | |
| 6 | 195184 | chr6 | NT_167248.1 | 517395-712579 | 41 | 27 | AT_rich (7) | L2c (3) | L2b (3) | |
| 7 | 189424 | chr6 | NT_167247.1 | 4410526-4599950 | 28 | 21 | L2b (3) | AluSx (3) | MLT1J (2) | |
| 8 | 188895 | chr6 | NT_167244.1 | 3175357-3364252 | 39 | 20 | AluSx (8) | L1MB3 (4) | MIR (3) | |
| 9 | 177193 | chr6 | NT_167247.1 | 1556910-1734103 | 34 | 26 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 10 | 175657 | chr6 | NT_167249.1 | 2131892-2307549 | 35 | 17 | Charlie2b (6) | AluSx (6) | L1MB8 (3) | |
| 11 | 170333 | chr6 | NT_167244.1 | 2883745-3054078 | 72 | 32 | AluY (7) | L1MC5 (6) | AluSc (5) | |
| 12 | 169197 | chr8 | NT_167187.1 | 31411024-31580221 | 43 | 14 | ALR/Alpha (25) | LTR14C (2) | L1PA5 (2) | |
| 13 | 169020 | chr6 | NT_167244.1 | 1997092-2166112 | 23 | 16 | AluSx (4) | FRAM (2) | AluY (2) | |
| 14 | 162771 | chr7 | NT_023603.5 | 32659-195430 | 5 | 2 | L1PA2 (4) | ALR/Alpha (1) | ||
| 15 | 156815 | chr9 | NT_008470.19 | 21686855-21843670 | 13 | 9 | MER5B (2) | LTR67B (2) | L1M5 (2) | |
| 16 | 150190 | chrX | NT_011786.16 | 4261398-4411588 | 117 | 43 | AluSx (16) | MER33 (14) | AluSc (13) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 316333 | chrY | NT_011875.12 | 8413928-8730261 | ZNF884P | |
| 5 | 206740 | chr6 | NT_167244.1 | 3780132-3986872 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 195184 | chr6 | NT_167248.1 | 517395-712579 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| OR10C1 | olfactory_receptor_10C1 | |||||
| 7 | 189424 | chr6 | NT_167247.1 | 4410526-4599950 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| 8 | 188895 | chr6 | NT_167244.1 | 3175357-3364252 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||