| Enzyme: | PpuMI | Longest uncut segments |
| Specificity: | RGGWCCY | Repeats in uncut segments |
| Number of sites: | 1078310 | Genes in uncut segments |
| Mean distance between sites: | 2653 base pairs | |
| Standard deviation: | 3462 base pairs | |
| Site density | 376.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 503567 | chr15 | NT_037852.6 | 1396667-1900234 | 1.13 % in | 31 repeats | 1.42 % in | 1 genes |
| 2 | 404124 | chr6 | NT_167244.1 | 2357497-2761621 | 0.52 % in | 9 repeats | 0.00 % in | 0 genes |
| 3 | 209499 | chr6 | NT_167244.1 | 4389631-4599130 | 0.71 % in | 8 repeats | 0.00 % in | 0 genes |
| 4 | 195304 | chrY | NT_011875.12 | 8536349-8731653 | 72.85 % in | 54 repeats | 0.41 % in | 1 genes |
| 5 | 184008 | chr6 | NT_167244.1 | 3787656-3971664 | 1.01 % in | 10 repeats | 0.00 % in | 0 genes |
| 6 | 177100 | chr6 | NT_167244.1 | 3179848-3356948 | 0.41 % in | 6 repeats | 0.64 % in | 2 genes |
| 7 | 173502 | chr6 | NT_167247.1 | 4421892-4595394 | 0.66 % in | 2 repeats | 100.00 % in | 1 genes |
| 8 | 170082 | chr6 | NT_167249.1 | 2136527-2306609 | 2.40 % in | 17 repeats | 0.00 % in | 0 genes |
| 9 | 164622 | chr6 | NT_167247.1 | 1562083-1726705 | 0.08 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 161162 | chr7 | NT_023603.5 | 33360-194522 | 100.00 % in | 3 repeats | 0.00 % in | 0 genes |
| 11 | 159618 | chr6 | NT_167248.1 | 521877-681495 | 0.19 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 153045 | chr9 | NT_008470.19 | 21690631-21843676 | 1.22 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 149335 | chr6 | NT_167244.1 | 2891709-3041044 | 3.24 % in | 25 repeats | 0.00 % in | 0 genes |
| 14 | 127576 | chr6 | NT_167244.1 | 3486973-3614549 | 8.90 % in | 36 repeats | 0.00 % in | 0 genes |
| 15 | 119937 | chr6 | NT_167245.1 | 2604375-2724312 | 1.66 % in | 6 repeats | 0.00 % in | 0 genes |
| 16 | 117817 | chr5 | NW_003315917.1 | 1145633-1263450 | 6.29 % in | 31 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 503567 | chr15 | NT_037852.6 | 1396667-1900234 | 31 | 21 | (TA)n (3) | L2a (3) | AT_rich (3) | |
| 2 | 404124 | chr6 | NT_167244.1 | 2357497-2761621 | 9 | 7 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 209499 | chr6 | NT_167244.1 | 4389631-4599130 | 8 | 7 | AluSx (2) | (TTCC)n (1) | MER57-int (1) | |
| 4 | 195304 | chrY | NT_011875.12 | 8536349-8731653 | 54 | 27 | LTR12B (10) | L1PA16 (7) | L1ME3A (6) | |
| 5 | 184008 | chr6 | NT_167244.1 | 3787656-3971664 | 10 | 9 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 6 | 177100 | chr6 | NT_167244.1 | 3179848-3356948 | 6 | 5 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 173502 | chr6 | NT_167247.1 | 4421892-4595394 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 8 | 170082 | chr6 | NT_167249.1 | 2136527-2306609 | 17 | 9 | Charlie2b (4) | AluSx (4) | L1MB8 (3) | |
| 9 | 164622 | chr6 | NT_167247.1 | 1562083-1726705 | 2 | 2 | L1MC3 (1) | A-rich (1) | ||
| 10 | 161162 | chr7 | NT_023603.5 | 33360-194522 | 3 | 2 | L1PA2 (2) | ALR/Alpha (1) | ||
| 11 | 159618 | chr6 | NT_167248.1 | 521877-681495 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 153045 | chr9 | NT_008470.19 | 21690631-21843676 | 8 | 6 | LTR67B (2) | L1M4b (2) | MSTA (1) | |
| 13 | 149335 | chr6 | NT_167244.1 | 2891709-3041044 | 25 | 13 | L1MC5 (6) | AluY (3) | AluSc (3) | |
| 14 | 127576 | chr6 | NT_167244.1 | 3486973-3614549 | 36 | 17 | AluSx (7) | AluSg (5) | L1M2 (4) | |
| 15 | 119937 | chr6 | NT_167245.1 | 2604375-2724312 | 6 | 6 | MLT1N2 (1) | MLT1E2 (1) | MER5B (1) | |
| 16 | 117817 | chr5 | NW_003315917.1 | 1145633-1263450 | 31 | 20 | AT_rich (6) | AluSg (3) | Tigger3c (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 503567 | chr15 | NT_037852.6 | 1396667-1900234 | LOC100418897 | |
| 4 | 195304 | chrY | NT_011875.12 | 8536349-8731653 | ZNF884P | |
| 6 | 177100 | chr6 | NT_167244.1 | 3179848-3356948 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 173502 | chr6 | NT_167247.1 | 4421892-4595394 | LOC100507722 | hypothetical_protein_LOC100507722 |