Enzyme: | SdaI | Longest uncut segments |
Specificity: | CCTGCAGG | Repeats in uncut segments |
Number of sites: | 76937 | Genes in uncut segments |
Mean distance between sites: | 37190 base pairs | |
Standard deviation: | 53243 base pairs | |
Site density | 26.9 per megabase | Help |
Distribution of closely spaced sites |
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Distribution of sites within 7 STD distance |
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Longest uncut segments | ||||||||
# | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
1 | 1056072 | chr3 | NT_005612.16 | 70706663-71762735 | 49.73 % in | 1758 repeats | 10.37 % in | 2 genes |
2 | 865730 | chr13 | NT_024524.14 | 64294729-65160459 | 52.13 % in | 1375 repeats | 0.20 % in | 1 genes |
3 | 810071 | chr9 | NT_008413.18 | 20746649-21556720 | 48.65 % in | 1169 repeats | 48.67 % in | 27 genes |
4 | 746365 | chr6 | NT_007299.13 | 5766099-6512464 | 56.49 % in | 1191 repeats | 0.12 % in | 1 genes |
5 | 744422 | chr4 | NT_016354.19 | 87405585-88150007 | 49.63 % in | 1260 repeats | 30.64 % in | 2 genes |
6 | 732510 | chr13 | NT_024524.14 | 52879572-53612082 | 34.23 % in | 1078 repeats | 58.66 % in | 2 genes |
7 | 706626 | chr3 | NT_005612.16 | 50812302-51518928 | 52.53 % in | 1163 repeats | 0.00 % in | 0 genes |
8 | 668417 | chr21 | NT_011512.11 | 9034969-9703386 | 56.38 % in | 1158 repeats | 0.69 % in | 2 genes |
9 | 661694 | chr13 | NT_009952.14 | 2470353-3132047 | 52.91 % in | 1083 repeats | 0.00 % in | 0 genes |
10 | 660942 | chr2 | NT_022135.16 | 31821990-32482932 | 35.19 % in | 967 repeats | 0.00 % in | 0 genes |
11 | 656771 | chr5 | NT_006576.16 | 22235429-22892200 | 41.96 % in | 1044 repeats | 0.00 % in | 0 genes |
12 | 637271 | chr1 | NT_004487.19 | 25603637-26240908 | 59.84 % in | 1101 repeats | 0.00 % in | 0 genes |
13 | 636974 | chr5 | NT_006576.16 | 29023040-29660014 | 55.88 % in | 1030 repeats | 0.00 % in | 0 genes |
14 | 632482 | chr8 | NT_008046.16 | 7025068-7657550 | 44.96 % in | 989 repeats | 0.00 % in | 0 genes |
15 | 629881 | chr18 | NT_025028.14 | 14229292-14859173 | 41.67 % in | 1021 repeats | 0.00 % in | 0 genes |
16 | 622614 | chr12 | NT_029419.12 | 52723324-53345938 | 52.68 % in | 1070 repeats | 0.00 % in | 0 genes |
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Repeats in longest uncut segments | ||||||||||
# | Length | Chr | Scaffold | Coordinates | Repeats | |||||
Total | Distinct | Most | Second | Third | ||||||
1 | 1056072 | chr3 | NT_005612.16 | 70706663-71762735 | 1758 | 339 | AT_rich (233) | L2a (57) | MIRb (51) | |
2 | 865730 | chr13 | NT_024524.14 | 64294729-65160459 | 1375 | 322 | AT_rich (176) | (TA)n (40) | AluSx (35) | |
3 | 810071 | chr9 | NT_008413.18 | 20746649-21556720 | 1169 | 260 | AT_rich (111) | MIRb (57) | AluSx (45) | |
4 | 746365 | chr6 | NT_007299.13 | 5766099-6512464 | 1191 | 278 | AT_rich (169) | L2a (44) | (TA)n (43) | |
5 | 744422 | chr4 | NT_016354.19 | 87405585-88150007 | 1260 | 307 | AT_rich (133) | L2a (49) | AluY (45) | |
6 | 732510 | chr13 | NT_024524.14 | 52879572-53612082 | 1078 | 235 | AT_rich (154) | MIR (53) | MIRb (47) | |
7 | 706626 | chr3 | NT_005612.16 | 50812302-51518928 | 1163 | 288 | AT_rich (143) | L2a (39) | MIRb (33) | |
8 | 668417 | chr21 | NT_011512.11 | 9034969-9703386 | 1158 | 295 | AT_rich (136) | (TA)n (35) | AluY (32) | |
9 | 661694 | chr13 | NT_009952.14 | 2470353-3132047 | 1083 | 268 | AT_rich (143) | AluSx (37) | L2a (28) | |
10 | 660942 | chr2 | NT_022135.16 | 31821990-32482932 | 967 | 232 | AT_rich (127) | MIRb (47) | L2c (38) | |
11 | 656771 | chr5 | NT_006576.16 | 22235429-22892200 | 1044 | 243 | AT_rich (130) | L2a (48) | AluY (37) | |
12 | 637271 | chr1 | NT_004487.19 | 25603637-26240908 | 1101 | 239 | AT_rich (81) | AluSx (64) | MIR (38) | |
13 | 636974 | chr5 | NT_006576.16 | 29023040-29660014 | 1030 | 264 | AT_rich (117) | L1M5 (31) | AluSx (30) | |
14 | 632482 | chr8 | NT_008046.16 | 7025068-7657550 | 989 | 256 | AT_rich (92) | MIRb (51) | L2c (49) | |
15 | 629881 | chr18 | NT_025028.14 | 14229292-14859173 | 1021 | 249 | AT_rich (136) | MIRb (31) | L2a (31) | |
16 | 622614 | chr12 | NT_029419.12 | 52723324-53345938 | 1070 | 267 | AT_rich (94) | L2a (45) | L2c (34) |
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Genes in longest uncut segments | ||||||
Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
1 | 1056072 | chr3 | NT_005612.16 | 70706663-71762735 | SI | sucrase-isomaltase,_intestinal |
SLITRK3 | SLIT_and_NTRK-like_protein_3_precursor | |||||
2 | 865730 | chr13 | NT_024524.14 | 64294729-65160459 | LOC647317 | |
3 | 810071 | chr9 | NT_008413.18 | 20746649-21556720 | MIR491 | microRNA:hsa-mir-491 |
PTPLAD2 | 3-hydroxyacyl-CoA_dehydratase_4 | |||||
IFNNP1 | ||||||
IFNB1 | interferon_beta_precursor | |||||
IFNW1 | interferon_omega-1_precursor | |||||
IFNA21 | interferon_alpha-21_precursor | |||||
IFNWP15 | ||||||
IFNA4 | interferon_alpha-4_precursor | |||||
IFNWP9 | ||||||
IFNA7 | interferon_alpha-7_precursor | |||||
IFNA10 | interferon_alpha-10_precursor | |||||
IFNWP18 | ||||||
IFNA16 | interferon_alpha-16_precursor | |||||
IFNA17 | interferon_alpha-17_precursor | |||||
IFNWP5 | ||||||
IFNA14 | interferon_alpha-14_precursor | |||||
IFNA22P | ||||||
IFNA5 | interferon_alpha-5_precursor | |||||
KLHL9 | kelch-like_protein_9 | |||||
IFNA6 | interferon_alpha-6_precursor | |||||
IFNA13 | interferon_alpha-1/13_precursor | |||||
IFNA2 | interferon_alpha-2_precursor | |||||
IFNWP12 | ||||||
IFNA8 | interferon_alpha-8_precursor | |||||
IFNWP2 | ||||||
IFNA1 | interferon_alpha-1/13_precursor | |||||
MIR31 | microRNA:hsa-mir-31 | |||||
4 | 746365 | chr6 | NT_007299.13 | 5766099-6512464 | LOC100420211 | |
5 | 744422 | chr4 | NT_016354.19 | 87405585-88150007 | FSTL5 | follistatin-related_protein_5_isoform_c |
LOC100131135 | ||||||
6 | 732510 | chr13 | NT_024524.14 | 52879572-53612082 | RPL35AP31 | dachshund_homolog_1_isoform_c |
RPS10P21 | ||||||
8 | 668417 | chr21 | NT_011512.11 | 9034969-9703386 | LOC100420035 | |
MAPK6PS2 | ||||||