| Enzyme: | SphI | Longest uncut segments |
| Specificity: | GCATGC | Repeats in uncut segments |
| Number of sites: | 545628 | Genes in uncut segments |
| Mean distance between sites: | 5244 base pairs | |
| Standard deviation: | 5663 base pairs | |
| Site density | 190.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 496822 | chr15 | NT_037852.6 | 1391081-1887903 | 1.12 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 411219 | chr6 | NT_167244.1 | 2359809-2771028 | 1.04 % in | 18 repeats | 0.00 % in | 0 genes |
| 3 | 277983 | chrY | NT_011875.12 | 8474054-8752037 | 79.95 % in | 82 repeats | 0.29 % in | 1 genes |
| 4 | 211047 | chr6 | NT_167244.1 | 4387748-4598795 | 1.48 % in | 9 repeats | 0.00 % in | 0 genes |
| 5 | 187729 | chr6 | NT_167244.1 | 3785044-3972773 | 1.89 % in | 19 repeats | 1.30 % in | 1 genes |
| 6 | 180350 | chr6 | NT_167248.1 | 508672-689022 | 9.64 % in | 13 repeats | 0.44 % in | 1 genes |
| 7 | 180293 | chr6 | NT_167244.1 | 3180139-3360432 | 1.47 % in | 13 repeats | 2.40 % in | 2 genes |
| 8 | 178926 | chr6 | NT_167247.1 | 4420969-4599895 | 2.12 % in | 18 repeats | 100.00 % in | 1 genes |
| 9 | 177801 | chr6 | NT_167247.1 | 1562298-1740099 | 5.13 % in | 30 repeats | 0.00 % in | 0 genes |
| 10 | 172514 | chr6 | NT_167249.1 | 2132085-2304599 | 3.14 % in | 25 repeats | 0.00 % in | 0 genes |
| 11 | 162834 | chr9 | NT_008470.19 | 21683543-21846377 | 4.61 % in | 25 repeats | 0.00 % in | 0 genes |
| 12 | 160238 | chr7 | NT_023603.5 | 40708-200946 | 100.00 % in | 4 repeats | 0.00 % in | 0 genes |
| 13 | 156556 | chr6 | NT_167244.1 | 2008636-2165192 | 0.32 % in | 3 repeats | 0.00 % in | 0 genes |
| 14 | 149903 | chr6 | NT_167244.1 | 2890439-3040342 | 3.83 % in | 29 repeats | 0.00 % in | 0 genes |
| 15 | 132614 | chr6 | NT_167246.1 | 3255895-3388509 | 4.64 % in | 30 repeats | 0.00 % in | 0 genes |
| 16 | 130509 | chr14 | NT_026437.12 | 191795-322304 | 97.03 % in | 17 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 496822 | chr15 | NT_037852.6 | 1391081-1887903 | 18 | 14 | L1MDa (5) | MLT1L (1) | MIRc (1) | |
| 2 | 411219 | chr6 | NT_167244.1 | 2359809-2771028 | 18 | 13 | AluY (3) | LTR84b (2) | L2b (2) | |
| 3 | 277983 | chrY | NT_011875.12 | 8474054-8752037 | 82 | 35 | LTR12B (13) | A-rich (9) | L1PA16 (8) | |
| 4 | 211047 | chr6 | NT_167244.1 | 4387748-4598795 | 9 | 7 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 5 | 187729 | chr6 | NT_167244.1 | 3785044-3972773 | 19 | 15 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 6 | 180350 | chr6 | NT_167248.1 | 508672-689022 | 13 | 12 | AT_rich (2) | (TA)n (1) | LTR7 (1) | |
| 7 | 180293 | chr6 | NT_167244.1 | 3180139-3360432 | 13 | 8 | AluSx (3) | MIRb (2) | L2c (2) | |
| 8 | 178926 | chr6 | NT_167247.1 | 4420969-4599895 | 18 | 14 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 9 | 177801 | chr6 | NT_167247.1 | 1562298-1740099 | 30 | 19 | L1PB2 (4) | L1MEf (3) | MSTB (2) | |
| 10 | 172514 | chr6 | NT_167249.1 | 2132085-2304599 | 25 | 13 | AluSx (5) | L1MB8 (3) | AluJo (3) | |
| 11 | 162834 | chr9 | NT_008470.19 | 21683543-21846377 | 25 | 16 | L1M5 (3) | AluSq (3) | MER5B (2) | |
| 12 | 160238 | chr7 | NT_023603.5 | 40708-200946 | 4 | 2 | L1PA2 (2) | ALR/Alpha (2) | ||
| 13 | 156556 | chr6 | NT_167244.1 | 2008636-2165192 | 3 | 3 | MIRb (1) | MIR (1) | AluSx (1) | |
| 14 | 149903 | chr6 | NT_167244.1 | 2890439-3040342 | 29 | 15 | L1MC5 (6) | AluY (5) | AluSc (3) | |
| 15 | 132614 | chr6 | NT_167246.1 | 3255895-3388509 | 30 | 18 | AluSx (6) | MIRb (4) | L1MC5 (3) | |
| 16 | 130509 | chr14 | NT_026437.12 | 191795-322304 | 17 | 12 | CER (4) | AluY (2) | AluSp (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 277983 | chrY | NT_011875.12 | 8474054-8752037 | ZNF884P | |
| 5 | 187729 | chr6 | NT_167244.1 | 3785044-3972773 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 180350 | chr6 | NT_167248.1 | 508672-689022 | OR12D1P | |
| 7 | 180293 | chr6 | NT_167244.1 | 3180139-3360432 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 178926 | chr6 | NT_167247.1 | 4420969-4599895 | LOC100507722 | hypothetical_protein_LOC100507722 |