| Enzyme: | PflMI | Longest uncut segments |
| Specificity: | CCANNNNNTGG | Repeats in uncut segments |
| Number of sites: | 974536 | Genes in uncut segments |
| Mean distance between sites: | 2936 base pairs | |
| Standard deviation: | 3306 base pairs | |
| Site density | 340.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 501540 | chr15 | NT_037852.6 | 1395444-1896984 | 1.05 % in | 24 repeats | 0.78 % in | 1 genes |
| 2 | 402276 | chr6 | NT_167244.1 | 2359404-2761680 | 0.08 % in | 2 repeats | 0.00 % in | 0 genes |
| 3 | 209458 | chr6 | NT_167244.1 | 4389949-4599407 | 0.63 % in | 7 repeats | 0.00 % in | 0 genes |
| 4 | 185791 | chr6 | NT_167244.1 | 3785656-3971447 | 1.08 % in | 13 repeats | 0.99 % in | 1 genes |
| 5 | 177736 | chr6 | NT_167247.1 | 4418772-4596508 | 1.47 % in | 11 repeats | 100.00 % in | 1 genes |
| 6 | 176116 | chr6 | NT_167244.1 | 3180007-3356123 | 0.24 % in | 5 repeats | 0.12 % in | 1 genes |
| 7 | 173957 | chr6 | NT_167249.1 | 2130540-2304497 | 3.73 % in | 29 repeats | 0.00 % in | 0 genes |
| 8 | 166578 | chr6 | NT_167247.1 | 1560669-1727247 | 0.67 % in | 5 repeats | 1.37 % in | 1 genes |
| 9 | 160416 | chr6 | NT_167248.1 | 521028-681444 | 0.69 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 156770 | chr6 | NT_167244.1 | 2008324-2165094 | 0.52 % in | 4 repeats | 0.00 % in | 0 genes |
| 11 | 155457 | chr9 | NT_008470.19 | 21690613-21846070 | 1.75 % in | 12 repeats | 0.00 % in | 0 genes |
| 12 | 143813 | chr6 | NT_167244.1 | 2894162-3037975 | 0.47 % in | 6 repeats | 0.00 % in | 0 genes |
| 13 | 125291 | chr1 | NT_077389.3 | 264585-389876 | 99.44 % in | 55 repeats | 0.00 % in | 0 genes |
| 14 | 119583 | chr6 | NT_167245.1 | 2606069-2725652 | 1.59 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 118756 | chr6 | NT_167245.1 | 135685-254441 | 5.77 % in | 19 repeats | 0.00 % in | 0 genes |
| 16 | 117986 | chr6 | NT_167244.1 | 586619-704605 | 5.76 % in | 30 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 501540 | chr15 | NT_037852.6 | 1395444-1896984 | 24 | 19 | L2a (3) | MER44C (2) | L1M5 (2) | |
| 2 | 402276 | chr6 | NT_167244.1 | 2359404-2761680 | 2 | 2 | L4 (1) | AluSp (1) | ||
| 3 | 209458 | chr6 | NT_167244.1 | 4389949-4599407 | 7 | 6 | AluSx (2) | L1PA15 (1) | L1ME3D (1) | |
| 4 | 185791 | chr6 | NT_167244.1 | 3785656-3971447 | 13 | 11 | AT_rich (2) | AluJb (2) | MLT1H-int (1) | |
| 5 | 177736 | chr6 | NT_167247.1 | 4418772-4596508 | 11 | 11 | (TTAAA)n (1) | MLT1J (1) | MIRb (1) | |
| 6 | 176116 | chr6 | NT_167244.1 | 3180007-3356123 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 173957 | chr6 | NT_167249.1 | 2130540-2304497 | 29 | 15 | AluSx (5) | L1MB8 (3) | AluJo (3) | |
| 8 | 166578 | chr6 | NT_167247.1 | 1560669-1727247 | 5 | 5 | MIRc (1) | MIR (1) | L2c (1) | |
| 9 | 160416 | chr6 | NT_167248.1 | 521028-681444 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 156770 | chr6 | NT_167244.1 | 2008324-2165094 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 11 | 155457 | chr9 | NT_008470.19 | 21690613-21846070 | 12 | 9 | LTR67B (2) | L2 (2) | L1M4b (2) | |
| 12 | 143813 | chr6 | NT_167244.1 | 2894162-3037975 | 6 | 6 | L1MC5 (1) | AluY (1) | AluSp (1) | |
| 13 | 125291 | chr1 | NT_077389.3 | 264585-389876 | 55 | 4 | ALR/Alpha (52) | MLT1J (1) | L1HS (1) | |
| 14 | 119583 | chr6 | NT_167245.1 | 2606069-2725652 | 5 | 4 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 118756 | chr6 | NT_167245.1 | 135685-254441 | 19 | 18 | L2c (2) | (TTTC)n (1) | tRNA-Phe-TTY (1) | |
| 16 | 117986 | chr6 | NT_167244.1 | 586619-704605 | 30 | 23 | L2b (3) | L1MA9 (3) | L2c (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 501540 | chr15 | NT_037852.6 | 1395444-1896984 | LOC100418897 | |
| 4 | 185791 | chr6 | NT_167244.1 | 3785656-3971447 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 177736 | chr6 | NT_167247.1 | 4418772-4596508 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 176116 | chr6 | NT_167244.1 | 3180007-3356123 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 8 | 166578 | chr6 | NT_167247.1 | 1560669-1727247 | LOC100421582 | tripartite_motif-containing_protein_26 |