| Enzyme: | Mva1269I | Longest uncut segments |
| Specificity: | GAATGC | Repeats in uncut segments |
| Number of sites: | 1226740 | Genes in uncut segments |
| Mean distance between sites: | 2332 base pairs | |
| Standard deviation: | 2479 base pairs | |
| Site density | 428.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 492621 | chr15 | NT_037852.6 | 1395230-1887851 | 0.33 % in | 9 repeats | 0.00 % in | 0 genes |
| 2 | 404391 | chr6 | NT_167244.1 | 2356935-2761326 | 0.55 % in | 9 repeats | 0.00 % in | 0 genes |
| 3 | 210792 | chr6 | NT_167244.1 | 4389135-4599927 | 1.06 % in | 12 repeats | 0.00 % in | 0 genes |
| 4 | 185976 | chr6 | NT_167244.1 | 3169753-3355729 | 2.93 % in | 38 repeats | 5.63 % in | 1 genes |
| 5 | 181802 | chr6 | NT_167244.1 | 3790067-3971869 | 0.76 % in | 7 repeats | 0.00 % in | 0 genes |
| 6 | 173288 | chr6 | NT_167247.1 | 4421576-4594864 | 0.35 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 168758 | chr6 | NT_167249.1 | 2135338-2304096 | 1.70 % in | 15 repeats | 0.00 % in | 0 genes |
| 8 | 167775 | chr6 | NT_167247.1 | 1560223-1727998 | 1.31 % in | 10 repeats | 1.63 % in | 1 genes |
| 9 | 161656 | chr6 | NT_167248.1 | 521888-683544 | 1.45 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 157153 | chr6 | NT_167244.1 | 2007936-2165089 | 0.76 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 152743 | chr6 | NT_167244.1 | 2888125-3040868 | 5.20 % in | 42 repeats | 0.00 % in | 0 genes |
| 12 | 151553 | chr9 | NT_008470.19 | 21692022-21843575 | 0.58 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 143437 | chrY | NT_011875.12 | 8491885-8635322 | 65.09 % in | 6 repeats | 0.00 % in | 0 genes |
| 14 | 123226 | chr6 | NT_167246.1 | 3257501-3380727 | 2.34 % in | 17 repeats | 0.00 % in | 0 genes |
| 15 | 120751 | chr6 | NT_167247.1 | 1175814-1296565 | 1.77 % in | 5 repeats | 0.00 % in | 0 genes |
| 16 | 119522 | chr6 | NT_167245.1 | 2605381-2724903 | 1.66 % in | 4 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 492621 | chr15 | NT_037852.6 | 1395230-1887851 | 9 | 9 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 404391 | chr6 | NT_167244.1 | 2356935-2761326 | 9 | 7 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 210792 | chr6 | NT_167244.1 | 4389135-4599927 | 12 | 10 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 185976 | chr6 | NT_167244.1 | 3169753-3355729 | 38 | 21 | AluSx (5) | L1MC5 (4) | L1MB3 (4) | |
| 5 | 181802 | chr6 | NT_167244.1 | 3790067-3971869 | 7 | 6 | MLT1H-int (2) | MER52D (1) | LTR19B (1) | |
| 6 | 173288 | chr6 | NT_167247.1 | 4421576-4594864 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 168758 | chr6 | NT_167249.1 | 2135338-2304096 | 15 | 8 | AluSx (4) | L1MB8 (3) | MLT1A (2) | |
| 8 | 167775 | chr6 | NT_167247.1 | 1560223-1727998 | 10 | 8 | Tigger7 (2) | MIR (2) | MIRc (1) | |
| 9 | 161656 | chr6 | NT_167248.1 | 521888-683544 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 157153 | chr6 | NT_167244.1 | 2007936-2165089 | 5 | 4 | AluSx (2) | MIRb (1) | MIR (1) | |
| 11 | 152743 | chr6 | NT_167244.1 | 2888125-3040868 | 42 | 20 | L1MC5 (6) | AluY (5) | AluSc (4) | |
| 12 | 151553 | chr9 | NT_008470.19 | 21692022-21843575 | 3 | 2 | LTR67B (2) | L1M5 (1) | ||
| 13 | 143437 | chrY | NT_011875.12 | 8491885-8635322 | 6 | 2 | LTR12B (5) | LTR12D (1) | ||
| 14 | 123226 | chr6 | NT_167246.1 | 3257501-3380727 | 17 | 12 | L1MC5 (3) | AluSx (3) | MIRb (2) | |
| 15 | 120751 | chr6 | NT_167247.1 | 1175814-1296565 | 5 | 4 | ERV3-16A3_I-int (2) | L3 (1) | L2a (1) | |
| 16 | 119522 | chr6 | NT_167245.1 | 2605381-2724903 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 185976 | chr6 | NT_167244.1 | 3169753-3355729 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 173288 | chr6 | NT_167247.1 | 4421576-4594864 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 167775 | chr6 | NT_167247.1 | 1560223-1727998 | LOC100421582 | tripartite_motif-containing_protein_26 |