| Enzyme: | RpaTI | Longest uncut segments |
| Specificity: | GRTGGAG | Repeats in uncut segments |
| Number of sites: | 1332085 | Genes in uncut segments |
| Mean distance between sites: | 2148 base pairs | |
| Standard deviation: | 2589 base pairs | |
| Site density | 465.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 489200 | chr15 | NT_037852.6 | 1397516-1886716 | 0.09 % in | 4 repeats | 0.00 % in | 0 genes |
| 2 | 403324 | chr6 | NT_167244.1 | 2358709-2762033 | 0.24 % in | 4 repeats | 0.00 % in | 0 genes |
| 3 | 215785 | chr6 | NT_167244.1 | 4382659-4598444 | 1.97 % in | 12 repeats | 0.46 % in | 1 genes |
| 4 | 188012 | chrY | NT_011875.12 | 8527444-8715456 | 73.31 % in | 13 repeats | 0.00 % in | 0 genes |
| 5 | 183497 | chr6 | NT_167244.1 | 3787521-3971018 | 0.66 % in | 8 repeats | 0.00 % in | 0 genes |
| 6 | 176525 | chr6 | NT_167244.1 | 3178954-3355479 | 0.18 % in | 5 repeats | 0.72 % in | 1 genes |
| 7 | 173430 | chr6 | NT_167247.1 | 4422119-4595549 | 0.75 % in | 3 repeats | 100.00 % in | 1 genes |
| 8 | 172226 | chr6 | NT_167247.1 | 1559973-1732199 | 2.21 % in | 17 repeats | 1.73 % in | 1 genes |
| 9 | 167745 | chr6 | NT_167249.1 | 2135647-2303392 | 1.25 % in | 11 repeats | 0.00 % in | 0 genes |
| 10 | 162990 | chr6 | NT_167248.1 | 520530-683520 | 2.26 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 156551 | chr6 | NT_167244.1 | 2008245-2164796 | 0.57 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 151306 | chr9 | NT_008470.19 | 21692541-21843847 | 0.48 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 150195 | chr7 | NT_023603.5 | 46383-196578 | 100.00 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 143752 | chr6 | NT_167244.1 | 2894221-3037973 | 0.42 % in | 6 repeats | 0.00 % in | 0 genes |
| 15 | 123551 | chr10 | NT_008705.16 | 38712096-38835647 | 26.75 % in | 219 repeats | 0.00 % in | 0 genes |
| 16 | 121682 | chr6 | NT_167247.1 | 1170869-1292551 | 4.28 % in | 11 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 489200 | chr15 | NT_037852.6 | 1397516-1886716 | 4 | 4 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 403324 | chr6 | NT_167244.1 | 2358709-2762033 | 4 | 3 | AluJb (2) | L4 (1) | AluSp (1) | |
| 3 | 215785 | chr6 | NT_167244.1 | 4382659-4598444 | 12 | 8 | MER57-int (3) | AluY (2) | AluSx (2) | |
| 4 | 188012 | chrY | NT_011875.12 | 8527444-8715456 | 13 | 4 | LTR12B (10) | L1PA8A (1) | L1PA16 (1) | |
| 5 | 183497 | chr6 | NT_167244.1 | 3787521-3971018 | 8 | 7 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 6 | 176525 | chr6 | NT_167244.1 | 3178954-3355479 | 5 | 3 | GC_rich (3) | (CCG)n (1) | AluSp (1) | |
| 7 | 173430 | chr6 | NT_167247.1 | 4422119-4595549 | 3 | 3 | MER11A (1) | AluSg/x (1) | AluSc (1) | |
| 8 | 172226 | chr6 | NT_167247.1 | 1559973-1732199 | 17 | 14 | Tigger7 (2) | MIR (2) | L1MEe (2) | |
| 9 | 167745 | chr6 | NT_167249.1 | 2135647-2303392 | 11 | 8 | MLT1A (2) | AluSx (2) | AluJb (2) | |
| 10 | 162990 | chr6 | NT_167248.1 | 520530-683520 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 156551 | chr6 | NT_167244.1 | 2008245-2164796 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 12 | 151306 | chr9 | NT_008470.19 | 21692541-21843847 | 3 | 3 | MIR3 (1) | LTR67B (1) | L1M5 (1) | |
| 13 | 150195 | chr7 | NT_023603.5 | 46383-196578 | 4 | 2 | L1PA2 (2) | ALR/Alpha (2) | ||
| 14 | 143752 | chr6 | NT_167244.1 | 2894221-3037973 | 6 | 6 | L1MC5 (1) | AluY (1) | AluSp (1) | |
| 15 | 123551 | chr10 | NT_008705.16 | 38712096-38835647 | 219 | 33 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 16 | 121682 | chr6 | NT_167247.1 | 1170869-1292551 | 11 | 7 | L2 (3) | MIRb (2) | ERV3-16A3_I-int (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 215785 | chr6 | NT_167244.1 | 4382659-4598444 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 6 | 176525 | chr6 | NT_167244.1 | 3178954-3355479 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 173430 | chr6 | NT_167247.1 | 4422119-4595549 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 172226 | chr6 | NT_167247.1 | 1559973-1732199 | LOC100421582 | tripartite_motif-containing_protein_26 |