| Enzyme: | BsaWI | Longest uncut segments |
| Specificity: | WCCGGW | Repeats in uncut segments |
| Number of sites: | 276115 | Genes in uncut segments |
| Mean distance between sites: | 10362 base pairs | |
| Standard deviation: | 12538 base pairs | |
| Site density | 96.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 495389 | chr15 | NT_037852.6 | 1396122-1891511 | 0.89 % in | 20 repeats | 0.00 % in | 0 genes |
| 2 | 415818 | chr6 | NT_167244.1 | 2348293-2764111 | 1.97 % in | 37 repeats | 0.00 % in | 0 genes |
| 3 | 232762 | chr6 | NT_167244.1 | 4371897-4604659 | 7.44 % in | 36 repeats | 5.05 % in | 1 genes |
| 4 | 230974 | chr1 | NT_032977.9 | 68057055-68288029 | 35.00 % in | 362 repeats | 100.00 % in | 1 genes |
| 5 | 212721 | chr7 | NT_023603.5 | 28789-241510 | 99.97 % in | 13 repeats | 0.00 % in | 0 genes |
| 6 | 211641 | chrX | NT_011651.17 | 6699412-6911053 | 53.83 % in | 333 repeats | 38.64 % in | 3 genes |
| 7 | 192219 | chr6 | NT_167244.1 | 3165906-3358125 | 4.43 % in | 50 repeats | 8.46 % in | 2 genes |
| 8 | 189853 | chr6 | NT_167244.1 | 3787909-3977762 | 2.67 % in | 24 repeats | 0.00 % in | 0 genes |
| 9 | 173630 | chr6 | NT_167249.1 | 2129415-2303045 | 3.40 % in | 25 repeats | 0.00 % in | 0 genes |
| 10 | 172762 | chr6 | NT_167247.1 | 4421951-4594713 | 0.27 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 171792 | chr5 | NW_003315917.1 | 1084023-1255815 | 22.80 % in | 149 repeats | 0.00 % in | 0 genes |
| 12 | 171051 | chr9 | NT_008470.19 | 21677012-21848063 | 5.78 % in | 37 repeats | 0.00 % in | 0 genes |
| 13 | 170227 | chr6 | NT_167248.1 | 518912-689139 | 4.52 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 167978 | chr6 | NT_167244.1 | 2000378-2168356 | 2.78 % in | 23 repeats | 0.00 % in | 0 genes |
| 15 | 167506 | chr6 | NT_167247.1 | 1562918-1730424 | 1.02 % in | 8 repeats | 0.00 % in | 0 genes |
| 16 | 165751 | chr4 | NT_006316.16 | 391949-557700 | 5.33 % in | 59 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 495389 | chr15 | NT_037852.6 | 1396122-1891511 | 20 | 17 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 415818 | chr6 | NT_167244.1 | 2348293-2764111 | 37 | 25 | AluJb (4) | L1ME4a (3) | AluSx (3) | |
| 3 | 232762 | chr6 | NT_167244.1 | 4371897-4604659 | 36 | 21 | HUERS-P3-int (7) | MER57-int (3) | HERVH-int (3) | |
| 4 | 230974 | chr1 | NT_032977.9 | 68057055-68288029 | 362 | 126 | AT_rich (48) | L2a (21) | MIRb (18) | |
| 5 | 212721 | chr7 | NT_023603.5 | 28789-241510 | 13 | 4 | ALR/Alpha (7) | L1PA2 (4) | L1PA3 (1) | |
| 6 | 211641 | chrX | NT_011651.17 | 6699412-6911053 | 333 | 126 | AT_rich (24) | L2c (16) | MIR3 (11) | |
| 7 | 192219 | chr6 | NT_167244.1 | 3165906-3358125 | 50 | 27 | L1MC5 (6) | AluSx (6) | L1MB3 (4) | |
| 8 | 189853 | chr6 | NT_167244.1 | 3787909-3977762 | 24 | 20 | L2a (3) | MLT1H-int (2) | AT_rich (2) | |
| 9 | 173630 | chr6 | NT_167249.1 | 2129415-2303045 | 25 | 15 | MamGypLTR1b (3) | AluJo (3) | MLT2B1 (2) | |
| 10 | 172762 | chr6 | NT_167247.1 | 4421951-4594713 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 11 | 171792 | chr5 | NW_003315917.1 | 1084023-1255815 | 149 | 67 | AT_rich (12) | AluSx (9) | AluJo (9) | |
| 12 | 171051 | chr9 | NT_008470.19 | 21677012-21848063 | 37 | 25 | MIRb (3) | L1M5 (3) | AluSq (3) | |
| 13 | 170227 | chr6 | NT_167248.1 | 518912-689139 | 5 | 4 | AT_rich (2) | L1PREC2 (1) | HERVH-int (1) | |
| 14 | 167978 | chr6 | NT_167244.1 | 2000378-2168356 | 23 | 17 | AluSx (4) | MIR (2) | FRAM (2) | |
| 15 | 167506 | chr6 | NT_167247.1 | 1562918-1730424 | 8 | 6 | MIR (2) | L1MEe (2) | (GGAA)n (1) | |
| 16 | 165751 | chr4 | NT_006316.16 | 391949-557700 | 59 | 7 | (CA)n (46) | L1M4 (7) | L1PA10 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 232762 | chr6 | NT_167244.1 | 4371897-4604659 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 4 | 230974 | chr1 | NT_032977.9 | 68057055-68288029 | LOC100419654 | dihydropyrimidine_dehydrogenase_[NADP+]_isoform_2 |
| 6 | 211641 | chrX | NT_011651.17 | 6699412-6911053 | RPS6KA6 | ribosomal_protein_S6_kinase_alpha-6 |
| MIR548I4 | microRNA:hsa-mir-548i-4 | |||||
| HDX | highly_divergent_homeobox_isoform_2 | |||||
| 7 | 192219 | chr6 | NT_167244.1 | 3165906-3358125 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||