| Enzyme: | OgrI | Longest uncut segments |
| Specificity: | CAACNAC | Repeats in uncut segments |
| Number of sites: | 1037948 | Genes in uncut segments |
| Mean distance between sites: | 2756 base pairs | |
| Standard deviation: | 3162 base pairs | |
| Site density | 362.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 488952 | chr15 | NT_037852.6 | 1397753-1886705 | 0.05 % in | 4 repeats | 0.00 % in | 0 genes |
| 2 | 407353 | chr6 | NT_167244.1 | 2358395-2765748 | 0.66 % in | 12 repeats | 0.00 % in | 0 genes |
| 3 | 218018 | chr6 | NT_167244.1 | 4385531-4603549 | 3.81 % in | 21 repeats | 0.00 % in | 0 genes |
| 4 | 189496 | chr6 | NT_167244.1 | 3786018-3975514 | 2.50 % in | 23 repeats | 0.78 % in | 1 genes |
| 5 | 181667 | chr6 | NT_167244.1 | 3175583-3357250 | 1.99 % in | 28 repeats | 3.14 % in | 2 genes |
| 6 | 179376 | chr6 | NT_167247.1 | 4421505-4600881 | 2.04 % in | 17 repeats | 100.00 % in | 1 genes |
| 7 | 169200 | chr6 | NT_167247.1 | 1557996-1727196 | 1.71 % in | 13 repeats | 2.93 % in | 1 genes |
| 8 | 167682 | chr6 | NT_167249.1 | 2137711-2305393 | 1.24 % in | 9 repeats | 0.00 % in | 0 genes |
| 9 | 164311 | chr6 | NT_167248.1 | 520797-685108 | 3.04 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 162141 | chr6 | NT_167244.1 | 2005853-2167994 | 2.08 % in | 15 repeats | 0.00 % in | 0 genes |
| 11 | 155869 | chr9 | NT_008470.19 | 21687989-21843858 | 2.71 % in | 12 repeats | 0.00 % in | 0 genes |
| 12 | 152191 | chr6 | NT_167244.1 | 2892311-3044502 | 2.88 % in | 23 repeats | 0.00 % in | 0 genes |
| 13 | 128581 | chr1 | NT_077389.3 | 261274-389855 | 97.69 % in | 60 repeats | 0.00 % in | 0 genes |
| 14 | 122971 | chr6 | NT_167247.1 | 1173094-1296065 | 3.56 % in | 7 repeats | 0.00 % in | 0 genes |
| 15 | 120184 | chr6 | NT_167245.1 | 2603466-2723650 | 1.95 % in | 6 repeats | 0.00 % in | 0 genes |
| 16 | 119088 | chr10 | NT_008705.16 | 38710957-38830045 | 27.57 % in | 217 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 488952 | chr15 | NT_037852.6 | 1397753-1886705 | 4 | 4 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 407353 | chr6 | NT_167244.1 | 2358395-2765748 | 12 | 9 | LTR84b (2) | AluY (2) | AluJb (2) | |
| 3 | 218018 | chr6 | NT_167244.1 | 4385531-4603549 | 21 | 13 | MER57-int (3) | HERVH-int (3) | AluSx (3) | |
| 4 | 189496 | chr6 | NT_167244.1 | 3786018-3975514 | 23 | 19 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 5 | 181667 | chr6 | NT_167244.1 | 3175583-3357250 | 28 | 16 | AluSx (5) | L1MB3 (4) | GC_rich (3) | |
| 6 | 179376 | chr6 | NT_167247.1 | 4421505-4600881 | 17 | 13 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 7 | 169200 | chr6 | NT_167247.1 | 1557996-1727196 | 13 | 11 | Tigger7 (2) | MSTD (2) | (TG)n (1) | |
| 8 | 167682 | chr6 | NT_167249.1 | 2137711-2305393 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 9 | 164311 | chr6 | NT_167248.1 | 520797-685108 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 162141 | chr6 | NT_167244.1 | 2005853-2167994 | 15 | 10 | AluSx (4) | MIR (2) | AluJb (2) | |
| 11 | 155869 | chr9 | NT_008470.19 | 21687989-21843858 | 12 | 9 | MER5B (2) | LTR67B (2) | L1M4b (2) | |
| 12 | 152191 | chr6 | NT_167244.1 | 2892311-3044502 | 23 | 11 | L1MC5 (6) | L2c (3) | AluY (3) | |
| 13 | 128581 | chr1 | NT_077389.3 | 261274-389855 | 60 | 8 | ALR/Alpha (52) | MLT1J (2) | L2c (1) | |
| 14 | 122971 | chr6 | NT_167247.1 | 1173094-1296065 | 7 | 4 | L2 (3) | ERV3-16A3_I-int (2) | MLT1E2 (1) | |
| 15 | 120184 | chr6 | NT_167245.1 | 2603466-2723650 | 6 | 5 | MLT1N2 (2) | MER5B (1) | MER5A1 (1) | |
| 16 | 119088 | chr10 | NT_008705.16 | 38710957-38830045 | 217 | 29 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 189496 | chr6 | NT_167244.1 | 3786018-3975514 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 181667 | chr6 | NT_167244.1 | 3175583-3357250 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 179376 | chr6 | NT_167247.1 | 4421505-4600881 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 169200 | chr6 | NT_167247.1 | 1557996-1727196 | LOC100421582 | tripartite_motif-containing_protein_26 |