| Enzyme: | XhoII | Longest uncut segments |
| Specificity: | RGATCY | Repeats in uncut segments |
| Number of sites: | 2140821 | Genes in uncut segments |
| Mean distance between sites: | 1336 base pairs | |
| Standard deviation: | 1393 base pairs | |
| Site density | 748.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 487247 | chr15 | NT_037852.6 | 1398193-1885440 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 401644 | chr6 | NT_167244.1 | 2359727-2761371 | 0.06 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 210109 | chr6 | NT_167244.1 | 4388763-4598872 | 1.04 % in | 9 repeats | 0.00 % in | 0 genes |
| 4 | 188603 | chr6 | NT_167244.1 | 3786199-3974802 | 2.34 % in | 21 repeats | 0.69 % in | 1 genes |
| 5 | 176666 | chr6 | NT_167244.1 | 3179402-3356068 | 0.26 % in | 6 repeats | 0.47 % in | 1 genes |
| 6 | 175451 | chr6 | NT_167247.1 | 4420604-4596055 | 1.14 % in | 9 repeats | 100.00 % in | 1 genes |
| 7 | 165307 | chr6 | NT_167249.1 | 2137827-2303134 | 0.13 % in | 2 repeats | 0.00 % in | 0 genes |
| 8 | 165106 | chr6 | NT_167247.1 | 1562751-1727857 | 0.39 % in | 4 repeats | 0.12 % in | 1 genes |
| 9 | 159410 | chr6 | NT_167248.1 | 521862-681272 | 0.06 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 158287 | chr6 | NT_167244.1 | 2006667-2164954 | 1.07 % in | 7 repeats | 0.00 % in | 0 genes |
| 11 | 157111 | chr9 | NT_008470.19 | 21689423-21846534 | 2.47 % in | 13 repeats | 0.00 % in | 0 genes |
| 12 | 144859 | chr6 | NT_167244.1 | 2893355-3038214 | 0.79 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 117952 | chr6 | NT_167245.1 | 2605714-2723666 | 0.44 % in | 1 repeats | 0.00 % in | 0 genes |
| 14 | 116510 | chr6 | NT_167246.1 | 3261068-3377578 | 1.80 % in | 13 repeats | 0.00 % in | 0 genes |
| 15 | 115391 | chr6 | NT_167247.1 | 1177382-1292773 | 0.25 % in | 1 repeats | 0.00 % in | 0 genes |
| 16 | 111581 | chr6 | NT_167245.1 | 137012-248593 | 2.72 % in | 9 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 487247 | chr15 | NT_037852.6 | 1398193-1885440 | 1 | 1 | AT_rich (1) | |||
| 2 | 401644 | chr6 | NT_167244.1 | 2359727-2761371 | 1 | 1 | AluSp (1) | |||
| 3 | 210109 | chr6 | NT_167244.1 | 4388763-4598872 | 9 | 7 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 188603 | chr6 | NT_167244.1 | 3786199-3974802 | 21 | 18 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 5 | 176666 | chr6 | NT_167244.1 | 3179402-3356068 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 175451 | chr6 | NT_167247.1 | 4420604-4596055 | 9 | 9 | (TTAAA)n (1) | MIR (1) | MER11A (1) | |
| 7 | 165307 | chr6 | NT_167249.1 | 2137827-2303134 | 2 | 2 | L1MC4a (1) | AT_rich (1) | ||
| 8 | 165106 | chr6 | NT_167247.1 | 1562751-1727857 | 4 | 3 | MIR (2) | (GGAA)n (1) | AluSq (1) | |
| 9 | 159410 | chr6 | NT_167248.1 | 521862-681272 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 158287 | chr6 | NT_167244.1 | 2006667-2164954 | 7 | 5 | AluSx (3) | MIRb (1) | MIR (1) | |
| 11 | 157111 | chr9 | NT_008470.19 | 21689423-21846534 | 13 | 10 | LTR67B (2) | L2 (2) | L1M4b (2) | |
| 12 | 144859 | chr6 | NT_167244.1 | 2893355-3038214 | 8 | 7 | AluJo (2) | (TCC)n (1) | L1MC5 (1) | |
| 13 | 117952 | chr6 | NT_167245.1 | 2605714-2723666 | 1 | 1 | L2a (1) | |||
| 14 | 116510 | chr6 | NT_167246.1 | 3261068-3377578 | 13 | 9 | AluSx (3) | MIRb (2) | L1MC5 (2) | |
| 15 | 115391 | chr6 | NT_167247.1 | 1177382-1292773 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 16 | 111581 | chr6 | NT_167245.1 | 137012-248593 | 9 | 8 | L2c (2) | (TTTC)n (1) | MLT1F (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 188603 | chr6 | NT_167244.1 | 3786199-3974802 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 176666 | chr6 | NT_167244.1 | 3179402-3356068 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 175451 | chr6 | NT_167247.1 | 4420604-4596055 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 165106 | chr6 | NT_167247.1 | 1562751-1727857 | LOC100421582 | tripartite_motif-containing_protein_26 |