| Enzyme: | BsgI | Longest uncut segments |
| Specificity: | GTGCAG | Repeats in uncut segments |
| Number of sites: | 2038395 | Genes in uncut segments |
| Mean distance between sites: | 1403 base pairs | |
| Standard deviation: | 1600 base pairs | |
| Site density | 712.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 492845 | chr15 | NT_037852.6 | 1397383-1890228 | 0.64 % in | 14 repeats | 0.00 % in | 0 genes |
| 2 | 402679 | chr6 | NT_167244.1 | 2358895-2761574 | 0.19 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 208728 | chr6 | NT_167244.1 | 4389978-4598706 | 0.39 % in | 5 repeats | 0.00 % in | 0 genes |
| 4 | 182462 | chr6 | NT_167244.1 | 3788488-3970950 | 0.60 % in | 8 repeats | 0.00 % in | 0 genes |
| 5 | 175765 | chr6 | NT_167244.1 | 3179971-3355736 | 0.24 % in | 5 repeats | 0.14 % in | 1 genes |
| 6 | 173426 | chr6 | NT_167247.1 | 4422093-4595519 | 0.73 % in | 3 repeats | 100.00 % in | 1 genes |
| 7 | 166639 | chr6 | NT_167247.1 | 1561578-1728217 | 0.78 % in | 6 repeats | 0.82 % in | 1 genes |
| 8 | 164946 | chr6 | NT_167249.1 | 2138415-2303361 | 0.05 % in | 2 repeats | 0.00 % in | 0 genes |
| 9 | 164688 | chr4 | NT_006316.16 | 389970-554658 | 4.09 % in | 60 repeats | 0.00 % in | 0 genes |
| 10 | 161992 | chr6 | NT_167248.1 | 521777-683769 | 1.66 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 158130 | chr6 | NT_167244.1 | 2009188-2167318 | 0.47 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 153608 | chr9 | NT_008470.19 | 21692296-21845904 | 1.02 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 144239 | chr6 | NT_167244.1 | 2894510-3038749 | 0.89 % in | 8 repeats | 0.00 % in | 0 genes |
| 14 | 119248 | chr6 | NT_167245.1 | 2605633-2724881 | 1.44 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 118220 | chr6 | NT_167247.1 | 1175821-1294041 | 1.56 % in | 2 repeats | 0.00 % in | 0 genes |
| 16 | 113833 | chr6 | NT_167246.1 | 3261028-3374861 | 0.12 % in | 2 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 492845 | chr15 | NT_037852.6 | 1397383-1890228 | 14 | 11 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 402679 | chr6 | NT_167244.1 | 2358895-2761574 | 3 | 3 | L4 (1) | AluSp (1) | AluJb (1) | |
| 3 | 208728 | chr6 | NT_167244.1 | 4389978-4598706 | 5 | 4 | AluSx (2) | L1MC (1) | AluSg/x (1) | |
| 4 | 182462 | chr6 | NT_167244.1 | 3788488-3970950 | 8 | 7 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 175765 | chr6 | NT_167244.1 | 3179971-3355736 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 173426 | chr6 | NT_167247.1 | 4422093-4595519 | 3 | 3 | MER11A (1) | AluSg/x (1) | AluSc (1) | |
| 7 | 166639 | chr6 | NT_167247.1 | 1561578-1728217 | 6 | 5 | MIR (2) | L1MC3 (1) | (GGAA)n (1) | |
| 8 | 164946 | chr6 | NT_167249.1 | 2138415-2303361 | 2 | 2 | L1MB8 (1) | AluSx (1) | ||
| 9 | 164688 | chr4 | NT_006316.16 | 389970-554658 | 60 | 8 | (CA)n (47) | L1M4 (7) | MER5B (1) | |
| 10 | 161992 | chr6 | NT_167248.1 | 521777-683769 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 158130 | chr6 | NT_167244.1 | 2009188-2167318 | 4 | 4 | MIRb (1) | MER5A1 (1) | L1MC4a (1) | |
| 12 | 153608 | chr9 | NT_008470.19 | 21692296-21845904 | 8 | 6 | LTR67B (2) | L2 (2) | MIRb (1) | |
| 13 | 144239 | chr6 | NT_167244.1 | 2894510-3038749 | 8 | 6 | L1MC5 (2) | AluJo (2) | AluY (1) | |
| 14 | 119248 | chr6 | NT_167245.1 | 2605633-2724881 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 118220 | chr6 | NT_167247.1 | 1175821-1294041 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| 16 | 113833 | chr6 | NT_167246.1 | 3261028-3374861 | 2 | 2 | MIRb (1) | AluSx (1) | ||
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 175765 | chr6 | NT_167244.1 | 3179971-3355736 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 173426 | chr6 | NT_167247.1 | 4422093-4595519 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 166639 | chr6 | NT_167247.1 | 1561578-1728217 | LOC100421582 | tripartite_motif-containing_protein_26 |