| Enzyme: | NdeI | Longest uncut segments |
| Specificity: | CATATG | Repeats in uncut segments |
| Number of sites: | 897043 | Genes in uncut segments |
| Mean distance between sites: | 3189 base pairs | |
| Standard deviation: | 3866 base pairs | |
| Site density | 313.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 492894 | chr15 | NT_037852.6 | 1397923-1890817 | 0.65 % in | 13 repeats | 0.00 % in | 0 genes |
| 2 | 416551 | chr6 | NT_167244.1 | 2348339-2764890 | 2.11 % in | 38 repeats | 0.00 % in | 0 genes |
| 3 | 196091 | chr6 | NT_167244.1 | 3166153-3362244 | 5.17 % in | 58 repeats | 10.27 % in | 2 genes |
| 4 | 185739 | chr6 | NT_167244.1 | 3786883-3972622 | 1.30 % in | 14 repeats | 0.33 % in | 1 genes |
| 5 | 177602 | chr6 | NT_167247.1 | 4419501-4597103 | 1.37 % in | 11 repeats | 100.00 % in | 1 genes |
| 6 | 174271 | chr6 | NT_167249.1 | 2132090-2306361 | 4.06 % in | 32 repeats | 0.00 % in | 0 genes |
| 7 | 173622 | chr6 | NT_167244.1 | 1993701-2167323 | 3.89 % in | 34 repeats | 8.34 % in | 4 genes |
| 8 | 169038 | chr6 | NT_167247.1 | 1558264-1727302 | 1.62 % in | 14 repeats | 2.77 % in | 1 genes |
| 9 | 165260 | chr6 | NT_167248.1 | 518966-684226 | 3.60 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 159520 | chr6 | NT_167244.1 | 2884430-3043950 | 6.73 % in | 56 repeats | 0.00 % in | 0 genes |
| 11 | 156157 | chr9 | NT_008470.19 | 21691161-21847318 | 1.59 % in | 13 repeats | 0.00 % in | 0 genes |
| 12 | 140699 | chr6 | NT_167244.1 | 1819092-1959791 | 12.95 % in | 81 repeats | 0.00 % in | 0 genes |
| 13 | 132628 | chr6 | NT_167245.1 | 133176-265804 | 10.34 % in | 56 repeats | 0.00 % in | 0 genes |
| 14 | 119315 | chr6 | NT_167245.1 | 2606171-2725486 | 1.37 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 119233 | chr6 | NT_167247.1 | 1174589-1293822 | 2.54 % in | 4 repeats | 0.00 % in | 0 genes |
| 16 | 119078 | chr6 | NT_167246.1 | 3259010-3378088 | 2.23 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 492894 | chr15 | NT_037852.6 | 1397923-1890817 | 13 | 10 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 416551 | chr6 | NT_167244.1 | 2348339-2764890 | 38 | 27 | AluJb (4) | L1ME4a (3) | AluSx (3) | |
| 3 | 196091 | chr6 | NT_167244.1 | 3166153-3362244 | 58 | 28 | AluSx (9) | L1MC5 (6) | L1MB3 (4) | |
| 4 | 185739 | chr6 | NT_167244.1 | 3786883-3972622 | 14 | 12 | MLT1H-int (2) | AT_rich (2) | (TA)n (1) | |
| 5 | 177602 | chr6 | NT_167247.1 | 4419501-4597103 | 11 | 10 | MLT1J (2) | (TTAAA)n (1) | MIR (1) | |
| 6 | 174271 | chr6 | NT_167249.1 | 2132090-2306361 | 32 | 16 | AluSx (6) | Charlie2b (4) | L1MB8 (3) | |
| 7 | 173622 | chr6 | NT_167244.1 | 1993701-2167323 | 34 | 20 | AluSx (6) | L2c (3) | MIR (2) | |
| 8 | 169038 | chr6 | NT_167247.1 | 1558264-1727302 | 14 | 12 | Tigger7 (2) | MSTD (2) | (TG)n (1) | |
| 9 | 165260 | chr6 | NT_167248.1 | 518966-684226 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 159520 | chr6 | NT_167244.1 | 2884430-3043950 | 56 | 25 | L1MC5 (6) | AluY (6) | AluJo (5) | |
| 11 | 156157 | chr9 | NT_008470.19 | 21691161-21847318 | 13 | 10 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 12 | 140699 | chr6 | NT_167244.1 | 1819092-1959791 | 81 | 28 | AluSx (11) | L2c (7) | L2a (6) | |
| 13 | 132628 | chr6 | NT_167245.1 | 133176-265804 | 56 | 37 | AluSx (7) | L1MC5 (4) | AluY (4) | |
| 14 | 119315 | chr6 | NT_167245.1 | 2606171-2725486 | 5 | 4 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 119233 | chr6 | NT_167247.1 | 1174589-1293822 | 4 | 3 | ERV3-16A3_I-int (2) | LTR16B2 (1) | L2 (1) | |
| 16 | 119078 | chr6 | NT_167246.1 | 3259010-3378088 | 16 | 11 | L1MC5 (3) | AluSx (3) | MIRb (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 196091 | chr6 | NT_167244.1 | 3166153-3362244 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 4 | 185739 | chr6 | NT_167244.1 | 3786883-3972622 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 177602 | chr6 | NT_167247.1 | 4419501-4597103 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 173622 | chr6 | NT_167244.1 | 1993701-2167323 | MDC1 | mediator_of_DNA_damage_checkpoint_protein_1 |
| LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 | |||||
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 8 | 169038 | chr6 | NT_167247.1 | 1558264-1727302 | LOC100421582 | tripartite_motif-containing_protein_26 |