| Enzyme: | Tth111I | Longest uncut segments |
| Specificity: | GACNNNGTC | Repeats in uncut segments |
| Number of sites: | 703085 | Genes in uncut segments |
| Mean distance between sites: | 4069 base pairs | |
| Standard deviation: | 5193 base pairs | |
| Site density | 245.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 497319 | chr15 | NT_037852.6 | 1394397-1891716 | 1.05 % in | 23 repeats | 0.00 % in | 0 genes |
| 2 | 405323 | chr6 | NT_167244.1 | 2358864-2764187 | 0.25 % in | 5 repeats | 0.00 % in | 0 genes |
| 3 | 304822 | chrY | NT_011875.12 | 8417377-8722199 | 83.09 % in | 39 repeats | 0.26 % in | 1 genes |
| 4 | 261594 | chr7 | NT_007933.15 | 231704-493298 | 99.43 % in | 55 repeats | 0.00 % in | 0 genes |
| 5 | 232102 | chr7 | NT_023603.5 | 7944-240046 | 96.29 % in | 45 repeats | 0.00 % in | 0 genes |
| 6 | 218336 | chr6 | NT_167244.1 | 3759389-3977725 | 7.73 % in | 64 repeats | 5.98 % in | 1 genes |
| 7 | 218054 | chr6 | NT_167248.1 | 499470-717524 | 15.82 % in | 70 repeats | 2.42 % in | 4 genes |
| 8 | 209145 | chr6 | NT_167244.1 | 4389530-4598675 | 0.59 % in | 8 repeats | 0.00 % in | 0 genes |
| 9 | 186152 | chr6 | NT_167244.1 | 3170008-3356160 | 2.82 % in | 36 repeats | 0.00 % in | 0 genes |
| 10 | 185993 | chr6 | NT_167247.1 | 4411695-4597688 | 2.85 % in | 20 repeats | 0.00 % in | 0 genes |
| 11 | 178683 | chr4 | NT_006316.16 | 383985-562668 | 7.19 % in | 71 repeats | 0.00 % in | 0 genes |
| 12 | 174082 | chr5 | NT_006576.16 | 46197150-46371232 | 99.89 % in | 24 repeats | 0.00 % in | 0 genes |
| 13 | 173200 | chr6 | NT_167247.1 | 1559059-1732259 | 2.58 % in | 21 repeats | 0.00 % in | 0 genes |
| 14 | 166125 | chr6 | NT_167249.1 | 2137205-2303330 | 0.50 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 162842 | chr9 | NT_008470.19 | 21688882-21851724 | 3.77 % in | 20 repeats | 0.00 % in | 0 genes |
| 16 | 159837 | chr6 | NT_167244.1 | 2008220-2168057 | 1.32 % in | 9 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 497319 | chr15 | NT_037852.6 | 1394397-1891716 | 23 | 19 | L2a (3) | L1MDa (2) | L1M5 (2) | |
| 2 | 405323 | chr6 | NT_167244.1 | 2358864-2764187 | 5 | 5 | L4 (1) | L1MEg (1) | AluY (1) | |
| 3 | 304822 | chrY | NT_011875.12 | 8417377-8722199 | 39 | 15 | LTR12B (17) | L1PA16 (6) | LTR12D (2) | |
| 4 | 261594 | chr7 | NT_007933.15 | 231704-493298 | 55 | 13 | ALR/Alpha (33) | AluY (4) | L1PA5 (3) | |
| 5 | 232102 | chr7 | NT_023603.5 | 7944-240046 | 45 | 24 | AT_rich (8) | ALR/Alpha (7) | L1PA2 (4) | |
| 6 | 218336 | chr6 | NT_167244.1 | 3759389-3977725 | 64 | 39 | L2a (6) | AT_rich (4) | MIR (3) | |
| 7 | 218054 | chr6 | NT_167248.1 | 499470-717524 | 70 | 52 | AT_rich (7) | L2c (3) | L2b (3) | |
| 8 | 209145 | chr6 | NT_167244.1 | 4389530-4598675 | 8 | 7 | AluSx (2) | (TTCC)n (1) | MER57-int (1) | |
| 9 | 186152 | chr6 | NT_167244.1 | 3170008-3356160 | 36 | 20 | AluSx (5) | L1MC5 (4) | L1MB3 (4) | |
| 10 | 185993 | chr6 | NT_167247.1 | 4411695-4597688 | 20 | 16 | L2b (3) | MLT1J (2) | AluSx (2) | |
| 11 | 178683 | chr4 | NT_006316.16 | 383985-562668 | 71 | 17 | (CA)n (48) | L1M4 (7) | L1PA10 (2) | |
| 12 | 174082 | chr5 | NT_006576.16 | 46197150-46371232 | 24 | 8 | ALR/Alpha (14) | L1PA3 (3) | L1PA2 (2) | |
| 13 | 173200 | chr6 | NT_167247.1 | 1559059-1732259 | 21 | 17 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 14 | 166125 | chr6 | NT_167249.1 | 2137205-2303330 | 5 | 5 | L1MC4a (1) | L1MB8 (1) | AT_rich (1) | |
| 15 | 162842 | chr9 | NT_008470.19 | 21688882-21851724 | 20 | 15 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 16 | 159837 | chr6 | NT_167244.1 | 2008220-2168057 | 9 | 8 | MIR (2) | MIRb (1) | MER5A1 (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 304822 | chrY | NT_011875.12 | 8417377-8722199 | ZNF884P | |
| 6 | 218336 | chr6 | NT_167244.1 | 3759389-3977725 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 7 | 218054 | chr6 | NT_167248.1 | 499470-717524 | OR2G1P | |
| OR12D1P | ||||||
| OR11A1 | olfactory_receptor_11A1 | |||||
| OR10C1 | olfactory_receptor_10C1 | |||||