| Enzyme: | BciVI | Longest uncut segments |
| Specificity: | GTATCC | Repeats in uncut segments |
| Number of sites: | 684929 | Genes in uncut segments |
| Mean distance between sites: | 4177 base pairs | |
| Standard deviation: | 4407 base pairs | |
| Site density | 239.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494760 | chr15 | NT_037852.6 | 1393524-1888284 | 0.71 % in | 16 repeats | 0.00 % in | 0 genes |
| 2 | 412769 | chr6 | NT_167244.1 | 2353233-2766002 | 1.56 % in | 27 repeats | 0.00 % in | 0 genes |
| 3 | 212802 | chr6 | NT_167244.1 | 4388578-4601380 | 1.80 % in | 14 repeats | 0.00 % in | 0 genes |
| 4 | 193967 | chr9 | NT_008470.19 | 21676393-21870360 | 8.76 % in | 66 repeats | 0.00 % in | 0 genes |
| 5 | 192421 | chr6 | NT_167244.1 | 3165185-3357606 | 4.15 % in | 50 repeats | 8.56 % in | 2 genes |
| 6 | 185515 | chr6 | NT_167244.1 | 3786806-3972321 | 1.23 % in | 12 repeats | 0.37 % in | 1 genes |
| 7 | 178793 | chr6 | NT_167247.1 | 4420866-4599659 | 2.14 % in | 19 repeats | 100.00 % in | 1 genes |
| 8 | 167393 | chr6 | NT_167249.1 | 2137593-2304986 | 1.07 % in | 9 repeats | 0.00 % in | 0 genes |
| 9 | 166916 | chr6 | NT_167244.1 | 1998694-2165610 | 2.10 % in | 19 repeats | 0.00 % in | 0 genes |
| 10 | 165408 | chr6 | NT_167247.1 | 1562688-1728096 | 0.41 % in | 4 repeats | 0.00 % in | 0 genes |
| 11 | 165150 | chr6 | NT_167244.1 | 2876379-3041529 | 10.11 % in | 83 repeats | 0.00 % in | 0 genes |
| 12 | 161140 | chr6 | NT_167248.1 | 521234-682374 | 1.14 % in | 2 repeats | 0.00 % in | 0 genes |
| 13 | 154432 | chr6 | NT_167247.1 | 1150044-1304476 | 14.94 % in | 62 repeats | 0.00 % in | 0 genes |
| 14 | 139783 | chr1 | NT_167185.1 | 1492000-1631783 | 6.02 % in | 42 repeats | 0.00 % in | 0 genes |
| 15 | 126697 | chr6 | NT_167245.1 | 126020-252717 | 9.29 % in | 35 repeats | 0.00 % in | 0 genes |
| 16 | 125612 | chr6 | NT_167245.1 | 2600557-2726169 | 5.01 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494760 | chr15 | NT_037852.6 | 1393524-1888284 | 16 | 13 | L1MDa (3) | L2a (2) | (TA)n (1) | |
| 2 | 412769 | chr6 | NT_167244.1 | 2353233-2766002 | 27 | 18 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 212802 | chr6 | NT_167244.1 | 4388578-4601380 | 14 | 11 | MER57-int (2) | AluSx (2) | AluSg/x (2) | |
| 4 | 193967 | chr9 | NT_008470.19 | 21676393-21870360 | 66 | 44 | MLT1G1 (3) | MIRb (3) | L2 (3) | |
| 5 | 192421 | chr6 | NT_167244.1 | 3165185-3357606 | 50 | 27 | L1MC5 (6) | AluSx (6) | L1MB3 (4) | |
| 6 | 185515 | chr6 | NT_167244.1 | 3786806-3972321 | 12 | 10 | MLT1H-int (2) | AT_rich (2) | MLT1H (1) | |
| 7 | 178793 | chr6 | NT_167247.1 | 4420866-4599659 | 19 | 15 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 8 | 167393 | chr6 | NT_167249.1 | 2137593-2304986 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 9 | 166916 | chr6 | NT_167244.1 | 1998694-2165610 | 19 | 14 | AluSx (4) | FRAM (2) | AluJb (2) | |
| 10 | 165408 | chr6 | NT_167247.1 | 1562688-1728096 | 4 | 3 | MIR (2) | (GGAA)n (1) | AluSq (1) | |
| 11 | 165150 | chr6 | NT_167244.1 | 2876379-3041529 | 83 | 27 | AluJo (11) | AluY (8) | AluSx (8) | |
| 12 | 161140 | chr6 | NT_167248.1 | 521234-682374 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 13 | 154432 | chr6 | NT_167247.1 | 1150044-1304476 | 62 | 40 | ERV3-16A3_I-int (6) | Charlie9 (5) | L2 (4) | |
| 14 | 139783 | chr1 | NT_167185.1 | 1492000-1631783 | 42 | 17 | GA-rich (5) | MIRc (4) | (GA)n (4) | |
| 15 | 126697 | chr6 | NT_167245.1 | 126020-252717 | 35 | 27 | L1MEg (3) | AluSx (3) | (TTTC)n (2) | |
| 16 | 125612 | chr6 | NT_167245.1 | 2600557-2726169 | 16 | 13 | MLT1N2 (2) | MER21C (2) | L2 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 192421 | chr6 | NT_167244.1 | 3165185-3357606 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 185515 | chr6 | NT_167244.1 | 3786806-3972321 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 7 | 178793 | chr6 | NT_167247.1 | 4420866-4599659 | LOC100507722 | hypothetical_protein_LOC100507722 |