| Enzyme: | PsiI | Longest uncut segments |
| Specificity: | TTATAA | Repeats in uncut segments |
| Number of sites: | 1637157 | Genes in uncut segments |
| Mean distance between sites: | 1747 base pairs | |
| Standard deviation: | 2462 base pairs | |
| Site density | 572.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 487167 | chr15 | NT_037852.6 | 1398341-1885508 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 406088 | chr6 | NT_167244.1 | 2355357-2761445 | 0.89 % in | 17 repeats | 0.00 % in | 0 genes |
| 3 | 226648 | chrY | NT_011875.12 | 8490264-8716912 | 77.82 % in | 19 repeats | 0.00 % in | 0 genes |
| 4 | 209914 | chr6 | NT_167244.1 | 4389412-4599326 | 0.88 % in | 11 repeats | 0.00 % in | 0 genes |
| 5 | 187831 | chr6 | NT_167244.1 | 3786817-3974648 | 2.22 % in | 20 repeats | 0.36 % in | 1 genes |
| 6 | 182413 | chr6 | NT_167247.1 | 4412792-4595205 | 2.05 % in | 12 repeats | 97.63 % in | 1 genes |
| 7 | 180578 | chr6 | NT_167244.1 | 3178200-3358778 | 1.32 % in | 13 repeats | 2.56 % in | 2 genes |
| 8 | 170379 | chr6 | NT_167247.1 | 1561398-1731777 | 1.56 % in | 12 repeats | 0.91 % in | 1 genes |
| 9 | 168542 | chr6 | NT_167249.1 | 2137740-2306282 | 1.74 % in | 14 repeats | 0.00 % in | 0 genes |
| 10 | 167156 | chr6 | NT_167244.1 | 2000236-2167392 | 2.48 % in | 22 repeats | 0.00 % in | 0 genes |
| 11 | 164909 | chr6 | NT_167248.1 | 521106-686015 | 3.13 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 162105 | chr4 | NT_006316.16 | 391102-553207 | 3.21 % in | 55 repeats | 0.00 % in | 0 genes |
| 13 | 158613 | chr6 | NT_167244.1 | 2890922-3049535 | 4.02 % in | 32 repeats | 0.00 % in | 0 genes |
| 14 | 155795 | chr9 | NT_008470.19 | 21691636-21847431 | 1.60 % in | 12 repeats | 0.00 % in | 0 genes |
| 15 | 140145 | chr12 | NT_009714.17 | 27198885-27339030 | 84.70 % in | 127 repeats | 0.00 % in | 0 genes |
| 16 | 126297 | chr1 | NT_004350.19 | 2049133-2175430 | 3.61 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 487167 | chr15 | NT_037852.6 | 1398341-1885508 | 1 | 1 | AT_rich (1) | |||
| 2 | 406088 | chr6 | NT_167244.1 | 2355357-2761445 | 17 | 10 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 226648 | chrY | NT_011875.12 | 8490264-8716912 | 19 | 7 | LTR12B (12) | L1PA16 (2) | (TATAA)n (1) | |
| 4 | 209914 | chr6 | NT_167244.1 | 4389412-4599326 | 11 | 9 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 5 | 187831 | chr6 | NT_167244.1 | 3786817-3974648 | 20 | 17 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 6 | 182413 | chr6 | NT_167247.1 | 4412792-4595205 | 12 | 10 | L2b (3) | MIRc (1) | MIRb (1) | |
| 7 | 180578 | chr6 | NT_167244.1 | 3178200-3358778 | 13 | 9 | GC_rich (3) | L2c (2) | AluSp (2) | |
| 8 | 170379 | chr6 | NT_167247.1 | 1561398-1731777 | 12 | 10 | MIR (2) | L1MEe (2) | MSTB (1) | |
| 9 | 168542 | chr6 | NT_167249.1 | 2137740-2306282 | 14 | 6 | Charlie2b (4) | AluSx (4) | L1MB8 (3) | |
| 10 | 167156 | chr6 | NT_167244.1 | 2000236-2167392 | 22 | 17 | AluSx (4) | FRAM (2) | AluJb (2) | |
| 11 | 164909 | chr6 | NT_167248.1 | 521106-686015 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 162105 | chr4 | NT_006316.16 | 391102-553207 | 55 | 3 | (CA)n (47) | L1M4 (7) | MER5B (1) | |
| 13 | 158613 | chr6 | NT_167244.1 | 2890922-3049535 | 32 | 16 | L1MC5 (6) | AluY (5) | L2c (3) | |
| 14 | 155795 | chr9 | NT_008470.19 | 21691636-21847431 | 12 | 9 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 15 | 140145 | chr12 | NT_009714.17 | 27198885-27339030 | 127 | 7 | GSATII (116) | GSATX (4) | LTR12E (2) | |
| 16 | 126297 | chr1 | NT_004350.19 | 2049133-2175430 | 16 | 10 | L1MEf (4) | L1MB3 (3) | AluSg (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 187831 | chr6 | NT_167244.1 | 3786817-3974648 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 182413 | chr6 | NT_167247.1 | 4412792-4595205 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 180578 | chr6 | NT_167244.1 | 3178200-3358778 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 170379 | chr6 | NT_167247.1 | 1561398-1731777 | LOC100421582 | tripartite_motif-containing_protein_26 |