| Enzyme: | RlaII | Longest uncut segments |
| Specificity: | ACACAG | Repeats in uncut segments |
| Number of sites: | 2459197 | Genes in uncut segments |
| Mean distance between sites: | 1163 base pairs | |
| Standard deviation: | 1251 base pairs | |
| Site density | 859.5 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 491503 | chr15 | NT_037852.6 | 1397526-1889029 | 0.39 % in | 10 repeats | 0.00 % in | 0 genes |
| 2 | 403693 | chr6 | NT_167244.1 | 2357547-2761240 | 0.50 % in | 9 repeats | 0.00 % in | 0 genes |
| 3 | 211640 | chr6 | NT_167244.1 | 4387849-4599489 | 1.61 % in | 11 repeats | 0.00 % in | 0 genes |
| 4 | 181330 | chr6 | NT_167244.1 | 3789535-3970865 | 0.29 % in | 3 repeats | 0.00 % in | 0 genes |
| 5 | 177855 | chr6 | NT_167247.1 | 4420159-4598014 | 1.79 % in | 14 repeats | 100.00 % in | 1 genes |
| 6 | 176420 | chr6 | NT_167244.1 | 3179407-3355827 | 0.26 % in | 6 repeats | 0.46 % in | 1 genes |
| 7 | 172310 | chr6 | NT_167247.1 | 1559281-1731591 | 2.21 % in | 17 repeats | 2.13 % in | 1 genes |
| 8 | 168123 | chr6 | NT_167249.1 | 2138120-2306243 | 1.58 % in | 13 repeats | 0.00 % in | 0 genes |
| 9 | 161477 | chr6 | NT_167248.1 | 520238-681715 | 1.34 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 153181 | chr9 | NT_008470.19 | 21693048-21846229 | 0.72 % in | 6 repeats | 0.00 % in | 0 genes |
| 11 | 148304 | chr6 | NT_167244.1 | 2892389-3040693 | 2.82 % in | 22 repeats | 0.00 % in | 0 genes |
| 12 | 118065 | chr6 | NT_167245.1 | 2605904-2723969 | 0.45 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 117769 | chr6 | NT_167247.1 | 1175707-1293476 | 1.66 % in | 2 repeats | 0.00 % in | 0 genes |
| 14 | 114161 | chr6 | NT_167246.1 | 3260688-3374849 | 0.11 % in | 2 repeats | 0.00 % in | 0 genes |
| 15 | 109821 | chr6 | NT_167245.1 | 137473-247294 | 1.58 % in | 5 repeats | 0.00 % in | 0 genes |
| 16 | 109684 | chrY | NT_011875.12 | 8568693-8678377 | 54.32 % in | 7 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 491503 | chr15 | NT_037852.6 | 1397526-1889029 | 10 | 8 | L2a (3) | (TA)n (1) | MLT1L (1) | |
| 2 | 403693 | chr6 | NT_167244.1 | 2357547-2761240 | 9 | 7 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 211640 | chr6 | NT_167244.1 | 4387849-4599489 | 11 | 9 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 181330 | chr6 | NT_167244.1 | 3789535-3970865 | 3 | 3 | MLT1H-int (1) | MER52D (1) | AluJb (1) | |
| 5 | 177855 | chr6 | NT_167247.1 | 4420159-4598014 | 14 | 12 | MLT1J (2) | AluSx (2) | (TTAAA)n (1) | |
| 6 | 176420 | chr6 | NT_167244.1 | 3179407-3355827 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 172310 | chr6 | NT_167247.1 | 1559281-1731591 | 17 | 14 | Tigger7 (2) | MIR (2) | L1MEe (2) | |
| 8 | 168123 | chr6 | NT_167249.1 | 2138120-2306243 | 13 | 5 | Charlie2b (4) | AluSx (4) | L1MB8 (3) | |
| 9 | 161477 | chr6 | NT_167248.1 | 520238-681715 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 153181 | chr9 | NT_008470.19 | 21693048-21846229 | 6 | 5 | L2 (2) | MIRb (1) | MIR3 (1) | |
| 11 | 148304 | chr6 | NT_167244.1 | 2892389-3040693 | 22 | 11 | L1MC5 (6) | AluY (3) | AluSc (3) | |
| 12 | 118065 | chr6 | NT_167245.1 | 2605904-2723969 | 3 | 3 | MLT1E2 (1) | L2a (1) | L2 (1) | |
| 13 | 117769 | chr6 | NT_167247.1 | 1175707-1293476 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| 14 | 114161 | chr6 | NT_167246.1 | 3260688-3374849 | 2 | 2 | MIRb (1) | AluSx (1) | ||
| 15 | 109821 | chr6 | NT_167245.1 | 137473-247294 | 5 | 5 | MLT1F (1) | MLT1E2 (1) | LTR12C (1) | |
| 16 | 109684 | chrY | NT_011875.12 | 8568693-8678377 | 7 | 1 | LTR12B (7) | |||
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 177855 | chr6 | NT_167247.1 | 4420159-4598014 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 176420 | chr6 | NT_167244.1 | 3179407-3355827 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 172310 | chr6 | NT_167247.1 | 1559281-1731591 | LOC100421582 | tripartite_motif-containing_protein_26 |