| Enzyme: | SacI | Longest uncut segments |
| Specificity: | GAGCTC | Repeats in uncut segments |
| Number of sites: | 595174 | Genes in uncut segments |
| Mean distance between sites: | 4807 base pairs | |
| Standard deviation: | 5456 base pairs | |
| Site density | 208.0 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 498774 | chr15 | NT_037852.6 | 1396294-1895068 | 1.05 % in | 23 repeats | 0.40 % in | 1 genes |
| 2 | 411689 | chr6 | NT_167244.1 | 2357156-2768845 | 1.32 % in | 22 repeats | 0.00 % in | 0 genes |
| 3 | 221308 | chr6 | NT_167244.1 | 4378896-4600204 | 3.04 % in | 22 repeats | 2.15 % in | 1 genes |
| 4 | 195651 | chr6 | NT_167244.1 | 3787380-3983031 | 3.98 % in | 35 repeats | 0.06 % in | 1 genes |
| 5 | 177388 | chr6 | NT_167244.1 | 3178748-3356136 | 0.25 % in | 6 repeats | 0.83 % in | 1 genes |
| 6 | 177280 | chr6 | NT_167247.1 | 4419334-4596614 | 1.44 % in | 11 repeats | 100.00 % in | 1 genes |
| 7 | 169933 | chr6 | NT_167249.1 | 2135698-2305631 | 2.30 % in | 17 repeats | 0.00 % in | 0 genes |
| 8 | 166459 | chr6 | NT_167247.1 | 1562927-1729386 | 0.60 % in | 6 repeats | 0.02 % in | 1 genes |
| 9 | 164450 | chr6 | NT_167248.1 | 516885-681335 | 3.13 % in | 3 repeats | 0.00 % in | 0 genes |
| 10 | 159161 | chr6 | NT_167244.1 | 2006736-2165897 | 1.02 % in | 7 repeats | 0.00 % in | 0 genes |
| 11 | 155881 | chr9 | NT_008470.19 | 21691195-21847076 | 1.57 % in | 12 repeats | 0.00 % in | 0 genes |
| 12 | 144528 | chr6 | NT_167244.1 | 2893724-3038252 | 0.81 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 140054 | chr6 | NT_167247.1 | 1153891-1293945 | 11.33 % in | 40 repeats | 0.00 % in | 0 genes |
| 14 | 134665 | chr10 | NT_008705.16 | 38700844-38835509 | 28.61 % in | 242 repeats | 0.00 % in | 0 genes |
| 15 | 133299 | chr6 | NT_167244.1 | 1432437-1565736 | 17.02 % in | 67 repeats | 0.00 % in | 0 genes |
| 16 | 126193 | chr6 | NT_167244.1 | 3486053-3612246 | 8.35 % in | 33 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 498774 | chr15 | NT_037852.6 | 1396294-1895068 | 23 | 18 | L2a (3) | MER44C (2) | L1M5 (2) | |
| 2 | 411689 | chr6 | NT_167244.1 | 2357156-2768845 | 22 | 16 | AluY (3) | LTR84b (2) | L4 (2) | |
| 3 | 221308 | chr6 | NT_167244.1 | 4378896-4600204 | 22 | 17 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 4 | 195651 | chr6 | NT_167244.1 | 3787380-3983031 | 35 | 27 | L2a (6) | MLT1H-int (2) | L1M5 (2) | |
| 5 | 177388 | chr6 | NT_167244.1 | 3178748-3356136 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 177280 | chr6 | NT_167247.1 | 4419334-4596614 | 11 | 11 | (TTAAA)n (1) | MLT1J (1) | MIRb (1) | |
| 7 | 169933 | chr6 | NT_167249.1 | 2135698-2305631 | 17 | 10 | AluSx (4) | L1MB8 (3) | MLT1A (2) | |
| 8 | 166459 | chr6 | NT_167247.1 | 1562927-1729386 | 6 | 4 | MIR (2) | L1MEe (2) | (GGAA)n (1) | |
| 9 | 164450 | chr6 | NT_167248.1 | 516885-681335 | 3 | 3 | LTR7 (1) | L1PREC2 (1) | HERVH-int (1) | |
| 10 | 159161 | chr6 | NT_167244.1 | 2006736-2165897 | 7 | 5 | AluSx (3) | MIRb (1) | MIR (1) | |
| 11 | 155881 | chr9 | NT_008470.19 | 21691195-21847076 | 12 | 9 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 12 | 144528 | chr6 | NT_167244.1 | 2893724-3038252 | 8 | 7 | AluJo (2) | (TCC)n (1) | L1MC5 (1) | |
| 13 | 140054 | chr6 | NT_167247.1 | 1153891-1293945 | 40 | 29 | L2 (3) | L1M4 (3) | ERV3-16A3_I-int (3) | |
| 14 | 134665 | chr10 | NT_008705.16 | 38700844-38835509 | 242 | 49 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 15 | 133299 | chr6 | NT_167244.1 | 1432437-1565736 | 67 | 36 | L1MA1 (7) | AluY (5) | MER41C (3) | |
| 16 | 126193 | chr6 | NT_167244.1 | 3486053-3612246 | 33 | 15 | AluSx (6) | AluSg (5) | L1M2 (4) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 498774 | chr15 | NT_037852.6 | 1396294-1895068 | LOC100418897 | |
| 3 | 221308 | chr6 | NT_167244.1 | 4378896-4600204 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 4 | 195651 | chr6 | NT_167244.1 | 3787380-3983031 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 177388 | chr6 | NT_167244.1 | 3178748-3356136 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 177280 | chr6 | NT_167247.1 | 4419334-4596614 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166459 | chr6 | NT_167247.1 | 1562927-1729386 | LOC100421582 | tripartite_motif-containing_protein_26 |