| Enzyme: | MspA1I | Longest uncut segments |
| Specificity: | CMGCKG | Repeats in uncut segments |
| Number of sites: | 1437339 | Genes in uncut segments |
| Mean distance between sites: | 1990 base pairs | |
| Standard deviation: | 2663 base pairs | |
| Site density | 502.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 496981 | chr15 | NT_037852.6 | 1394367-1891348 | 1.00 % in | 22 repeats | 0.00 % in | 0 genes |
| 2 | 404799 | chr6 | NT_167244.1 | 2358973-2763772 | 0.22 % in | 4 repeats | 0.00 % in | 0 genes |
| 3 | 210622 | chr6 | NT_167244.1 | 4388009-4598631 | 1.28 % in | 8 repeats | 0.00 % in | 0 genes |
| 4 | 186168 | chr6 | NT_167244.1 | 3785363-3971531 | 1.28 % in | 13 repeats | 1.14 % in | 1 genes |
| 5 | 175637 | chr6 | NT_167244.1 | 3180187-3355824 | 0.22 % in | 4 repeats | 0.02 % in | 1 genes |
| 6 | 174538 | chrY | NT_011875.12 | 8473974-8648512 | 71.28 % in | 9 repeats | 0.00 % in | 0 genes |
| 7 | 173760 | chr7 | NT_023603.5 | 23397-197157 | 99.45 % in | 11 repeats | 0.00 % in | 0 genes |
| 8 | 172370 | chr6 | NT_167247.1 | 4422047-4594417 | 0.10 % in | 2 repeats | 100.00 % in | 1 genes |
| 9 | 171711 | chr6 | NT_167247.1 | 1557481-1729192 | 2.44 % in | 21 repeats | 0.00 % in | 0 genes |
| 10 | 171002 | chr6 | NT_167249.1 | 2136314-2307316 | 2.83 % in | 22 repeats | 0.00 % in | 0 genes |
| 11 | 161594 | chr6 | NT_167248.1 | 520235-681829 | 1.41 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 151519 | chr9 | NT_008470.19 | 21692304-21843823 | 0.51 % in | 4 repeats | 0.00 % in | 0 genes |
| 13 | 147462 | chr6 | NT_167244.1 | 2893759-3041221 | 2.24 % in | 20 repeats | 0.00 % in | 0 genes |
| 14 | 132842 | chr9 | NT_113916.2 | 28585-161427 | 99.97 % in | 3 repeats | 0.00 % in | 0 genes |
| 15 | 120835 | chr6 | NT_167245.1 | 2603992-2724827 | 2.38 % in | 8 repeats | 0.00 % in | 0 genes |
| 16 | 119548 | chr10 | NT_008705.16 | 38711078-38830626 | 27.48 % in | 218 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 496981 | chr15 | NT_037852.6 | 1394367-1891348 | 22 | 18 | L2a (3) | L1MDa (2) | L1M5 (2) | |
| 2 | 404799 | chr6 | NT_167244.1 | 2358973-2763772 | 4 | 4 | L4 (1) | L1MEg (1) | AluSp (1) | |
| 3 | 210622 | chr6 | NT_167244.1 | 4388009-4598631 | 8 | 7 | MER57-int (2) | (TTCC)n (1) | L1MC (1) | |
| 4 | 186168 | chr6 | NT_167244.1 | 3785363-3971531 | 13 | 11 | AT_rich (2) | AluJb (2) | MLT1H-int (1) | |
| 5 | 175637 | chr6 | NT_167244.1 | 3180187-3355824 | 4 | 4 | GC_rich (1) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 174538 | chrY | NT_011875.12 | 8473974-8648512 | 9 | 2 | LTR12B (8) | LTR12D (1) | ||
| 7 | 173760 | chr7 | NT_023603.5 | 23397-197157 | 11 | 5 | L1PA2 (4) | ALR/Alpha (3) | AT_rich (2) | |
| 8 | 172370 | chr6 | NT_167247.1 | 4422047-4594417 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 9 | 171711 | chr6 | NT_167247.1 | 1557481-1729192 | 21 | 16 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 10 | 171002 | chr6 | NT_167249.1 | 2136314-2307316 | 22 | 12 | Charlie2b (6) | AluSx (4) | L1MB8 (3) | |
| 11 | 161594 | chr6 | NT_167248.1 | 520235-681829 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 151519 | chr9 | NT_008470.19 | 21692304-21843823 | 4 | 3 | LTR67B (2) | MIR3 (1) | L1M5 (1) | |
| 13 | 147462 | chr6 | NT_167244.1 | 2893759-3041221 | 20 | 10 | L1MC5 (6) | AluSc (3) | L2c (2) | |
| 14 | 132842 | chr9 | NT_113916.2 | 28585-161427 | 3 | 2 | ALR/Alpha (2) | SUBTEL_sa (1) | ||
| 15 | 120835 | chr6 | NT_167245.1 | 2603992-2724827 | 8 | 7 | L2 (2) | MLT1N2 (1) | MLT1E2 (1) | |
| 16 | 119548 | chr10 | NT_008705.16 | 38711078-38830626 | 218 | 30 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 186168 | chr6 | NT_167244.1 | 3785363-3971531 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 175637 | chr6 | NT_167244.1 | 3180187-3355824 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 8 | 172370 | chr6 | NT_167247.1 | 4422047-4594417 | LOC100507722 | hypothetical_protein_LOC100507722 |