| Enzyme: | HpaI | Longest uncut segments |
| Specificity: | GTTAAC | Repeats in uncut segments |
| Number of sites: | 387237 | Genes in uncut segments |
| Mean distance between sites: | 7389 base pairs | |
| Standard deviation: | 8047 base pairs | |
| Site density | 135.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 497839 | chr15 | NT_037852.6 | 1389903-1887742 | 1.35 % in | 19 repeats | 0.00 % in | 0 genes |
| 2 | 407660 | chr6 | NT_167244.1 | 2358436-2766096 | 0.69 % in | 12 repeats | 0.00 % in | 0 genes |
| 3 | 214899 | chr6 | NT_167247.1 | 4406256-4621155 | 5.05 % in | 47 repeats | 94.92 % in | 3 genes |
| 4 | 207798 | chr6 | NT_167244.1 | 3787288-3995086 | 7.06 % in | 56 repeats | 0.10 % in | 1 genes |
| 5 | 202880 | chr6 | NT_167249.1 | 2134745-2337625 | 11.46 % in | 79 repeats | 4.34 % in | 1 genes |
| 6 | 191141 | chr6 | NT_167244.1 | 3166620-3357761 | 4.16 % in | 49 repeats | 7.94 % in | 2 genes |
| 7 | 185619 | chr6 | NT_167248.1 | 502005-687624 | 11.14 % in | 21 repeats | 0.00 % in | 0 genes |
| 8 | 179894 | chr9 | NT_008470.19 | 21685548-21865442 | 6.66 % in | 42 repeats | 0.00 % in | 0 genes |
| 9 | 172096 | chr6 | NT_167244.1 | 1994734-2166830 | 3.39 % in | 31 repeats | 0.00 % in | 0 genes |
| 10 | 171312 | chr1 | NT_004350.19 | 2047618-2218930 | 12.15 % in | 72 repeats | 0.00 % in | 0 genes |
| 11 | 170549 | chr6 | NT_167247.1 | 1562036-1732585 | 1.58 % in | 15 repeats | 0.00 % in | 0 genes |
| 12 | 163783 | chr6 | NT_167244.1 | 1436632-1600415 | 18.20 % in | 82 repeats | 0.00 % in | 0 genes |
| 13 | 160772 | chr6 | NT_167244.1 | 2891570-3052342 | 4.09 % in | 33 repeats | 0.00 % in | 0 genes |
| 14 | 152138 | chrX | NT_011669.17 | 98957-251095 | 99.45 % in | 32 repeats | 0.00 % in | 0 genes |
| 15 | 151125 | chr6 | NT_167246.1 | 3002600-3153725 | 15.40 % in | 122 repeats | 0.00 % in | 0 genes |
| 16 | 143844 | chr12 | NT_009714.17 | 27197687-27341531 | 85.09 % in | 129 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 497839 | chr15 | NT_037852.6 | 1389903-1887742 | 19 | 14 | L1MDa (6) | MLT1L (1) | MIRc (1) | |
| 2 | 407660 | chr6 | NT_167244.1 | 2358436-2766096 | 12 | 9 | LTR84b (2) | AluY (2) | AluJb (2) | |
| 3 | 214899 | chr6 | NT_167247.1 | 4406256-4621155 | 47 | 31 | L2b (3) | L1PB1 (3) | AluSx (3) | |
| 4 | 207798 | chr6 | NT_167244.1 | 3787288-3995086 | 56 | 40 | L2a (6) | L1P3 (3) | L1MEc (3) | |
| 5 | 202880 | chr6 | NT_167249.1 | 2134745-2337625 | 79 | 38 | AluSx (10) | Charlie2b (6) | L2a (4) | |
| 6 | 191141 | chr6 | NT_167244.1 | 3166620-3357761 | 49 | 26 | L1MC5 (6) | AluSx (6) | L1MB3 (4) | |
| 7 | 185619 | chr6 | NT_167248.1 | 502005-687624 | 21 | 18 | MER4D (2) | L1PA14 (2) | L1M5 (2) | |
| 8 | 179894 | chr9 | NT_008470.19 | 21685548-21865442 | 42 | 30 | L2 (3) | L1M5 (3) | Tigger1 (2) | |
| 9 | 172096 | chr6 | NT_167244.1 | 1994734-2166830 | 31 | 18 | AluSx (6) | L2c (3) | MIR (2) | |
| 10 | 171312 | chr1 | NT_004350.19 | 2047618-2218930 | 72 | 44 | MIR (5) | AluJb (5) | L1MEf (4) | |
| 11 | 170549 | chr6 | NT_167247.1 | 1562036-1732585 | 15 | 12 | MSTB (2) | MIR (2) | L1MEe (2) | |
| 12 | 163783 | chr6 | NT_167244.1 | 1436632-1600415 | 82 | 45 | L1MA1 (7) | AluSx (6) | AluY (5) | |
| 13 | 160772 | chr6 | NT_167244.1 | 2891570-3052342 | 33 | 18 | L1MC5 (6) | L2c (3) | AluY (3) | |
| 14 | 152138 | chrX | NT_011669.17 | 98957-251095 | 32 | 10 | ALR/Alpha (17) | L1PA2 (4) | L1PA3 (3) | |
| 15 | 151125 | chr6 | NT_167246.1 | 3002600-3153725 | 122 | 39 | AluSx (20) | AluY (11) | L2c (10) | |
| 16 | 143844 | chr12 | NT_009714.17 | 27197687-27341531 | 129 | 8 | GSATII (116) | GSATX (4) | ALR/Alpha (3) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 214899 | chr6 | NT_167247.1 | 4406256-4621155 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||
| 4 | 207798 | chr6 | NT_167244.1 | 3787288-3995086 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 202880 | chr6 | NT_167249.1 | 2134745-2337625 | LOC100507679 | hypothetical_protein_LOC100507679 |
| 6 | 191141 | chr6 | NT_167244.1 | 3166620-3357761 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||