| Enzyme: | CviKI-1 | Longest uncut segments |
| Specificity: | RGCY | Repeats in uncut segments |
| Number of sites: | 44296043 | Genes in uncut segments |
| Mean distance between sites: | 64 base pairs | |
| Standard deviation: | 81 base pairs | |
| Site density | 15480.8 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 401264 | chr6 | NT_167244.1 | 2359970-2761234 | 0.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 207900 | chr6 | NT_167244.1 | 4389986-4597886 | 0.02 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 159314 | chr6 | NT_167248.1 | 521896-681210 | 0.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 4 | 150176 | chr9 | NT_008470.19 | 21693209-21843385 | 0.04 % in | 1 repeats | 0.00 % in | 0 genes |
| 5 | 142830 | chr6 | NT_167244.1 | 2894653-3037483 | 0.00 % in | 2 repeats | 0.00 % in | 0 genes |
| 6 | 107909 | chr6 | NT_167245.1 | 138051-245960 | 0.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 7 | 104723 | chr6 | NT_167244.1 | 1451577-1556300 | 0.13 % in | 2 repeats | 0.00 % in | 0 genes |
| 8 | 103039 | chr6 | NT_167244.1 | 3491062-3594101 | 0.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 9 | 100616 | chr6 | NT_025741.15 | 72111287-72211903 | 0.36 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 100153 | chr7 | NT_007933.15 | 68187283-68287436 | 0.07 % in | 1 repeats | 0.00 % in | 0 genes |
| 11 | 100149 | chr1 | NT_167185.1 | 38191-138340 | 0.05 % in | 1 repeats | 0.00 % in | 0 genes |
| 12 | 100067 | chr9 | NT_008470.19 | 21507903-21607970 | 0.07 % in | 2 repeats | 0.00 % in | 0 genes |
| 13 | 100061 | chr5 | NW_003315917.1 | 1146053-1246114 | 0.06 % in | 2 repeats | 0.00 % in | 0 genes |
| 14 | 99456 | chr6 | NT_167247.1 | 2712447-2811903 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 15 | 89387 | chr6 | NT_167246.1 | 3062103-3151490 | 0.05 % in | 2 repeats | 0.00 % in | 0 genes |
| 16 | 87602 | chr6 | NT_167244.1 | 448570-536172 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 401264 | chr6 | NT_167244.1 | 2359970-2761234 | 1 | 1 | AluSp (1) | |||
| 2 | 207900 | chr6 | NT_167244.1 | 4389986-4597886 | 1 | 1 | AluSg/x (1) | |||
| 3 | 159314 | chr6 | NT_167248.1 | 521896-681210 | 1 | 1 | HERVH-int (1) | |||
| 4 | 150176 | chr9 | NT_008470.19 | 21693209-21843385 | 1 | 1 | L1M5 (1) | |||
| 5 | 142830 | chr6 | NT_167244.1 | 2894653-3037483 | 2 | 2 | AluY (1) | AluSg1 (1) | ||
| 6 | 107909 | chr6 | NT_167245.1 | 138051-245960 | 1 | 1 | LTR12C (1) | |||
| 7 | 104723 | chr6 | NT_167244.1 | 1451577-1556300 | 2 | 2 | ERV3-16A3_I-int (1) | AluSg1 (1) | ||
| 8 | 103039 | chr6 | NT_167244.1 | 3491062-3594101 | 1 | 1 | AluS (1) | |||
| 9 | 100616 | chr6 | NT_025741.15 | 72111287-72211903 | 2 | 2 | L1ME1 (1) | (CCA)n (1) | ||
| 10 | 100153 | chr7 | NT_007933.15 | 68187283-68287436 | 1 | 1 | L1PB1 (1) | |||
| 11 | 100149 | chr1 | NT_167185.1 | 38191-138340 | 1 | 1 | AluSg (1) | |||
| 12 | 100067 | chr9 | NT_008470.19 | 21507903-21607970 | 2 | 2 | L1ME1 (1) | Charlie4a (1) | ||
| 13 | 100061 | chr5 | NW_003315917.1 | 1146053-1246114 | 2 | 1 | AluSg (2) | |||
| 14 | 99456 | chr6 | NT_167247.1 | 2712447-2811903 | 1 | 1 | AluJb (1) | |||
| 15 | 89387 | chr6 | NT_167246.1 | 3062103-3151490 | 2 | 2 | AluS (1) | Alu (1) | ||
| 16 | 87602 | chr6 | NT_167244.1 | 448570-536172 | 1 | 1 | L1PA5 (1) | |||
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |