| Enzyme: | AflIII | Longest uncut segments |
| Specificity: | ACRYGT | Repeats in uncut segments |
| Number of sites: | 1466993 | Genes in uncut segments |
| Mean distance between sites: | 1950 base pairs | |
| Standard deviation: | 2206 base pairs | |
| Site density | 512.7 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 489116 | chr15 | NT_037852.6 | 1397449-1886565 | 0.09 % in | 4 repeats | 0.00 % in | 0 genes |
| 2 | 406181 | chr6 | NT_167244.1 | 2357452-2763633 | 0.57 % in | 10 repeats | 0.00 % in | 0 genes |
| 3 | 255472 | chr6 | NT_167244.1 | 2005460-2260932 | 3.26 % in | 38 repeats | 2.72 % in | 3 genes |
| 4 | 214366 | chr6 | NT_167244.1 | 4384859-4599225 | 2.31 % in | 16 repeats | 0.00 % in | 0 genes |
| 5 | 186002 | chr6 | NT_167244.1 | 3787092-3973094 | 1.48 % in | 16 repeats | 0.21 % in | 1 genes |
| 6 | 176866 | chr6 | NT_167249.1 | 2131070-2307936 | 4.96 % in | 37 repeats | 0.00 % in | 0 genes |
| 7 | 176319 | chr6 | NT_167244.1 | 3179918-3356237 | 0.24 % in | 5 repeats | 0.20 % in | 2 genes |
| 8 | 174870 | chr6 | NT_167247.1 | 4420229-4595099 | 0.79 % in | 6 repeats | 100.00 % in | 1 genes |
| 9 | 165888 | chr6 | NT_167247.1 | 1562248-1728136 | 0.43 % in | 5 repeats | 0.00 % in | 0 genes |
| 10 | 165071 | chr6 | NT_167248.1 | 521243-686314 | 3.04 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 156366 | chr9 | NT_008470.19 | 21693281-21849647 | 1.10 % in | 10 repeats | 0.00 % in | 0 genes |
| 12 | 146628 | chr6 | NT_167244.1 | 2893708-3040336 | 2.11 % in | 19 repeats | 0.00 % in | 0 genes |
| 13 | 124486 | chr10 | NT_008705.16 | 38710070-38834556 | 27.54 % in | 225 repeats | 0.00 % in | 0 genes |
| 14 | 124444 | chr6 | NT_167245.1 | 2603889-2728333 | 3.84 % in | 15 repeats | 0.00 % in | 0 genes |
| 15 | 123939 | chr6 | NT_167246.1 | 3260375-3384314 | 3.09 % in | 21 repeats | 0.00 % in | 0 genes |
| 16 | 117789 | chr6 | NT_167247.1 | 1175951-1293740 | 1.45 % in | 2 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 489116 | chr15 | NT_037852.6 | 1397449-1886565 | 4 | 4 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 406181 | chr6 | NT_167244.1 | 2357452-2763633 | 10 | 8 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 255472 | chr6 | NT_167244.1 | 2005460-2260932 | 38 | 23 | AluSx (5) | MIRb (3) | AluSg (3) | |
| 4 | 214366 | chr6 | NT_167244.1 | 4384859-4599225 | 16 | 11 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 5 | 186002 | chr6 | NT_167244.1 | 3787092-3973094 | 16 | 13 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 6 | 176866 | chr6 | NT_167249.1 | 2131070-2307936 | 37 | 19 | Charlie2b (6) | AluSx (6) | L1MB8 (3) | |
| 7 | 176319 | chr6 | NT_167244.1 | 3179918-3356237 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 8 | 174870 | chr6 | NT_167247.1 | 4420229-4595099 | 6 | 6 | MIR (1) | MER11A (1) | L2b (1) | |
| 9 | 165888 | chr6 | NT_167247.1 | 1562248-1728136 | 5 | 4 | MIR (2) | (GGAA)n (1) | A-rich (1) | |
| 10 | 165071 | chr6 | NT_167248.1 | 521243-686314 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 156366 | chr9 | NT_008470.19 | 21693281-21849647 | 10 | 7 | MIRb (2) | L2 (2) | (CA)n (2) | |
| 12 | 146628 | chr6 | NT_167244.1 | 2893708-3040336 | 19 | 10 | L1MC5 (6) | AluSc (3) | AluY (2) | |
| 13 | 124486 | chr10 | NT_008705.16 | 38710070-38834556 | 225 | 36 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 14 | 124444 | chr6 | NT_167245.1 | 2603889-2728333 | 15 | 13 | Tigger1 (2) | L2 (2) | (TG)n (1) | |
| 15 | 123939 | chr6 | NT_167246.1 | 3260375-3384314 | 21 | 15 | L1MC5 (3) | AluSx (3) | MIRb (2) | |
| 16 | 117789 | chr6 | NT_167247.1 | 1175951-1293740 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 255472 | chr6 | NT_167244.1 | 2005460-2260932 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 186002 | chr6 | NT_167244.1 | 3787092-3973094 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 7 | 176319 | chr6 | NT_167244.1 | 3179918-3356237 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 174870 | chr6 | NT_167247.1 | 4420229-4595099 | LOC100507722 | hypothetical_protein_LOC100507722 |