| Enzyme: | CchIII | Longest uncut segments |
| Specificity: | CCCAAG | Repeats in uncut segments |
| Number of sites: | 1779729 | Genes in uncut segments |
| Mean distance between sites: | 1607 base pairs | |
| Standard deviation: | 1836 base pairs | |
| Site density | 622.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 491286 | chr15 | NT_037852.6 | 1396079-1887365 | 0.31 % in | 9 repeats | 0.00 % in | 0 genes |
| 2 | 404249 | chr6 | NT_167244.1 | 2358967-2763216 | 0.22 % in | 4 repeats | 0.00 % in | 0 genes |
| 3 | 299094 | chrY | NT_011875.12 | 8417479-8716573 | 83.15 % in | 24 repeats | 0.00 % in | 0 genes |
| 4 | 208656 | chr6 | NT_167244.1 | 4389397-4598053 | 0.38 % in | 6 repeats | 0.00 % in | 0 genes |
| 5 | 185714 | chr6 | NT_167244.1 | 3784971-3970685 | 1.06 % in | 11 repeats | 1.36 % in | 1 genes |
| 6 | 176097 | chr6 | NT_167244.1 | 3179312-3355409 | 0.14 % in | 5 repeats | 0.52 % in | 1 genes |
| 7 | 175292 | chr6 | NT_167247.1 | 4419927-4595219 | 0.85 % in | 6 repeats | 100.00 % in | 1 genes |
| 8 | 165372 | chr6 | NT_167249.1 | 2138404-2303776 | 0.30 % in | 4 repeats | 0.00 % in | 0 genes |
| 9 | 164808 | chr6 | NT_167247.1 | 1562710-1727518 | 0.19 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 164088 | chr6 | NT_167248.1 | 521705-685793 | 2.78 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 157148 | chr6 | NT_167244.1 | 2007591-2164739 | 0.79 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 152854 | chr9 | NT_008470.19 | 21691552-21844406 | 0.89 % in | 5 repeats | 0.00 % in | 0 genes |
| 13 | 143711 | chr6 | NT_167244.1 | 2894302-3038013 | 0.43 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 126049 | chr1 | NT_077389.3 | 262214-388263 | 98.13 % in | 58 repeats | 0.00 % in | 0 genes |
| 15 | 123316 | chr6 | NT_167245.1 | 2601917-2725233 | 3.72 % in | 11 repeats | 0.00 % in | 0 genes |
| 16 | 119056 | chr6 | NT_167247.1 | 1174434-1293490 | 2.61 % in | 5 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 491286 | chr15 | NT_037852.6 | 1396079-1887365 | 9 | 9 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 404249 | chr6 | NT_167244.1 | 2358967-2763216 | 4 | 4 | L4 (1) | L1MEg (1) | AluSp (1) | |
| 3 | 299094 | chrY | NT_011875.12 | 8417479-8716573 | 24 | 7 | LTR12B (17) | LTR12D (2) | L1PA8A (1) | |
| 4 | 208656 | chr6 | NT_167244.1 | 4389397-4598053 | 6 | 5 | MER57-int (2) | (TTCC)n (1) | AluY (1) | |
| 5 | 185714 | chr6 | NT_167244.1 | 3784971-3970685 | 11 | 9 | AT_rich (2) | AluJb (2) | MLT1H-int (1) | |
| 6 | 176097 | chr6 | NT_167244.1 | 3179312-3355409 | 5 | 3 | GC_rich (3) | (CCG)n (1) | AluSp (1) | |
| 7 | 175292 | chr6 | NT_167247.1 | 4419927-4595219 | 6 | 6 | MIR (1) | MER11A (1) | L2b (1) | |
| 8 | 165372 | chr6 | NT_167249.1 | 2138404-2303776 | 4 | 2 | L1MB8 (2) | AluSx (2) | ||
| 9 | 164808 | chr6 | NT_167247.1 | 1562710-1727518 | 2 | 2 | MIR (1) | AluSq (1) | ||
| 10 | 164088 | chr6 | NT_167248.1 | 521705-685793 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 157148 | chr6 | NT_167244.1 | 2007591-2164739 | 5 | 4 | AluSx (2) | MIRb (1) | MIR (1) | |
| 12 | 152854 | chr9 | NT_008470.19 | 21691552-21844406 | 5 | 4 | LTR67B (2) | MSTA (1) | MIR3 (1) | |
| 13 | 143711 | chr6 | NT_167244.1 | 2894302-3038013 | 5 | 5 | L1MC5 (1) | AluY (1) | AluSp (1) | |
| 14 | 126049 | chr1 | NT_077389.3 | 262214-388263 | 58 | 6 | ALR/Alpha (52) | MLT1J (2) | L2c (1) | |
| 15 | 123316 | chr6 | NT_167245.1 | 2601917-2725233 | 11 | 9 | MLT1N2 (2) | L2 (2) | MLT1E2 (1) | |
| 16 | 119056 | chr6 | NT_167247.1 | 1174434-1293490 | 5 | 3 | L2 (2) | ERV3-16A3_I-int (2) | LTR16B2 (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 185714 | chr6 | NT_167244.1 | 3784971-3970685 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 176097 | chr6 | NT_167244.1 | 3179312-3355409 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 175292 | chr6 | NT_167247.1 | 4419927-4595219 | LOC100507722 | hypothetical_protein_LOC100507722 |