| Enzyme: | EcoNI | Longest uncut segments |
| Specificity: | CCTNNNNNAGG | Repeats in uncut segments |
| Number of sites: | 768378 | Genes in uncut segments |
| Mean distance between sites: | 3723 base pairs | |
| Standard deviation: | 4408 base pairs | |
| Site density | 268.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 499743 | chr15 | NT_037852.6 | 1396934-1896677 | 0.99 % in | 22 repeats | 0.72 % in | 1 genes |
| 2 | 404486 | chr6 | NT_167244.1 | 2357068-2761554 | 0.55 % in | 9 repeats | 0.00 % in | 0 genes |
| 3 | 211362 | chr6 | NT_167244.1 | 4387845-4599207 | 1.59 % in | 11 repeats | 0.00 % in | 0 genes |
| 4 | 198598 | chr6 | NT_167244.1 | 3782035-3980633 | 4.94 % in | 38 repeats | 2.75 % in | 1 genes |
| 5 | 181164 | chr6 | NT_167249.1 | 2135866-2317030 | 6.18 % in | 49 repeats | 0.00 % in | 0 genes |
| 6 | 176767 | chr6 | NT_167244.1 | 3179311-3356078 | 0.26 % in | 6 repeats | 0.52 % in | 1 genes |
| 7 | 174339 | chr6 | NT_167247.1 | 4421068-4595407 | 0.76 % in | 4 repeats | 100.00 % in | 1 genes |
| 8 | 168183 | chr6 | NT_167247.1 | 1561535-1729718 | 1.09 % in | 9 repeats | 0.84 % in | 1 genes |
| 9 | 164879 | chr6 | NT_167248.1 | 521866-686745 | 2.69 % in | 3 repeats | 0.00 % in | 0 genes |
| 10 | 158736 | chr6 | NT_167244.1 | 2882588-3041324 | 7.47 % in | 59 repeats | 0.00 % in | 0 genes |
| 11 | 158454 | chr6 | NT_167244.1 | 2007813-2166267 | 0.79 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 157850 | chr9 | NT_008470.19 | 21686935-21844785 | 3.23 % in | 15 repeats | 0.00 % in | 0 genes |
| 13 | 154220 | chr7 | NT_023603.5 | 40294-194514 | 100.00 % in | 2 repeats | 0.00 % in | 0 genes |
| 14 | 125568 | chr6 | NT_167245.1 | 128521-254089 | 7.74 % in | 30 repeats | 0.00 % in | 0 genes |
| 15 | 120393 | chr6 | NT_167245.1 | 2604379-2724772 | 2.02 % in | 7 repeats | 0.00 % in | 0 genes |
| 16 | 117269 | chr7 | NT_007933.15 | 68181647-68298916 | 10.73 % in | 19 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 499743 | chr15 | NT_037852.6 | 1396934-1896677 | 22 | 17 | L2a (3) | MER44C (2) | L1M5 (2) | |
| 2 | 404486 | chr6 | NT_167244.1 | 2357068-2761554 | 9 | 7 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 211362 | chr6 | NT_167244.1 | 4387845-4599207 | 11 | 9 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 198598 | chr6 | NT_167244.1 | 3782035-3980633 | 38 | 25 | L2a (9) | MLT1H-int (2) | L1M5 (2) | |
| 5 | 181164 | chr6 | NT_167249.1 | 2135866-2317030 | 49 | 28 | Charlie2b (6) | AluSx (6) | L1MB8 (3) | |
| 6 | 176767 | chr6 | NT_167244.1 | 3179311-3356078 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 174339 | chr6 | NT_167247.1 | 4421068-4595407 | 4 | 4 | MIR (1) | MER11A (1) | L2b (1) | |
| 8 | 168183 | chr6 | NT_167247.1 | 1561535-1729718 | 9 | 7 | MIR (2) | L1MEe (2) | L1MC3 (1) | |
| 9 | 164879 | chr6 | NT_167248.1 | 521866-686745 | 3 | 3 | L1PREC2 (1) | HERVH-int (1) | AT_rich (1) | |
| 10 | 158736 | chr6 | NT_167244.1 | 2882588-3041324 | 59 | 25 | AluY (7) | L1MC5 (6) | AluSx (5) | |
| 11 | 158454 | chr6 | NT_167244.1 | 2007813-2166267 | 5 | 4 | AluSx (2) | MIRb (1) | MIR (1) | |
| 12 | 157850 | chr9 | NT_008470.19 | 21686935-21844785 | 15 | 10 | MER5B (2) | LTR67B (2) | L2 (2) | |
| 13 | 154220 | chr7 | NT_023603.5 | 40294-194514 | 2 | 2 | L1PA2 (1) | ALR/Alpha (1) | ||
| 14 | 125568 | chr6 | NT_167245.1 | 128521-254089 | 30 | 26 | MER57A1 (2) | L2c (2) | AT_rich (2) | |
| 15 | 120393 | chr6 | NT_167245.1 | 2604379-2724772 | 7 | 6 | L2 (2) | MLT1N2 (1) | MLT1E2 (1) | |
| 16 | 117269 | chr7 | NT_007933.15 | 68181647-68298916 | 19 | 13 | L1PB1 (4) | L1PA2 (2) | L1MB7 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 499743 | chr15 | NT_037852.6 | 1396934-1896677 | LOC100418897 | |
| 4 | 198598 | chr6 | NT_167244.1 | 3782035-3980633 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 176767 | chr6 | NT_167244.1 | 3179311-3356078 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 174339 | chr6 | NT_167247.1 | 4421068-4595407 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 168183 | chr6 | NT_167247.1 | 1561535-1729718 | LOC100421582 | tripartite_motif-containing_protein_26 |