| Enzyme: | LlaGI | Longest uncut segments |
| Specificity: | CTNGAYG | Repeats in uncut segments |
| Number of sites: | 1240806 | Genes in uncut segments |
| Mean distance between sites: | 2306 base pairs | |
| Standard deviation: | 2395 base pairs | |
| Site density | 433.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490509 | chr15 | NT_037852.6 | 1395056-1885565 | 0.27 % in | 8 repeats | 0.00 % in | 0 genes |
| 2 | 408488 | chr6 | NT_167244.1 | 2358235-2766723 | 0.82 % in | 14 repeats | 0.00 % in | 0 genes |
| 3 | 211415 | chr6 | NT_167244.1 | 4388572-4599987 | 1.32 % in | 12 repeats | 0.00 % in | 0 genes |
| 4 | 183858 | chr6 | NT_167244.1 | 3788047-3971905 | 1.13 % in | 11 repeats | 0.00 % in | 0 genes |
| 5 | 182399 | chr6 | NT_167247.1 | 4414858-4597257 | 2.17 % in | 14 repeats | 98.76 % in | 1 genes |
| 6 | 179563 | chr6 | NT_167244.1 | 3175897-3355460 | 1.51 % in | 23 repeats | 2.41 % in | 1 genes |
| 7 | 167647 | chr6 | NT_167249.1 | 2137005-2304652 | 1.18 % in | 9 repeats | 0.00 % in | 0 genes |
| 8 | 166464 | chr6 | NT_167247.1 | 1562631-1729095 | 0.56 % in | 6 repeats | 0.19 % in | 1 genes |
| 9 | 165050 | chr6 | NT_167248.1 | 518388-683438 | 3.48 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 152692 | chr9 | NT_008470.19 | 21692379-21845071 | 0.68 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 149757 | chr7 | NT_023603.5 | 42892-192649 | 100.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 12 | 145152 | chr6 | NT_167244.1 | 2893340-3038492 | 0.93 % in | 9 repeats | 0.00 % in | 0 genes |
| 13 | 120659 | chr6 | NT_167246.1 | 3258603-3379262 | 2.20 % in | 16 repeats | 0.00 % in | 0 genes |
| 14 | 119571 | chr6 | NT_167245.1 | 2605554-2725125 | 1.70 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 116207 | chr6 | NT_167247.1 | 1176735-1292942 | 0.80 % in | 1 repeats | 0.00 % in | 0 genes |
| 16 | 112323 | chr6 | NT_167245.1 | 134838-247161 | 2.75 % in | 7 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490509 | chr15 | NT_037852.6 | 1395056-1885565 | 8 | 8 | MIRc (1) | MIRb (1) | L1MDa (1) | |
| 2 | 408488 | chr6 | NT_167244.1 | 2358235-2766723 | 14 | 10 | AluY (3) | LTR84b (2) | AluJb (2) | |
| 3 | 211415 | chr6 | NT_167244.1 | 4388572-4599987 | 12 | 10 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 183858 | chr6 | NT_167244.1 | 3788047-3971905 | 11 | 9 | MLT1H-int (2) | AT_rich (2) | MIR (1) | |
| 5 | 182399 | chr6 | NT_167247.1 | 4414858-4597257 | 14 | 13 | MLT1J (2) | (TTAAA)n (1) | MIRc (1) | |
| 6 | 179563 | chr6 | NT_167244.1 | 3175897-3355460 | 23 | 14 | AluSx (4) | L1MB3 (3) | GC_rich (3) | |
| 7 | 167647 | chr6 | NT_167249.1 | 2137005-2304652 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 8 | 166464 | chr6 | NT_167247.1 | 1562631-1729095 | 6 | 4 | MIR (2) | L1MEe (2) | (GGAA)n (1) | |
| 9 | 165050 | chr6 | NT_167248.1 | 518388-683438 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 152692 | chr9 | NT_008470.19 | 21692379-21845071 | 5 | 4 | L2 (2) | MIR3 (1) | LTR67B (1) | |
| 11 | 149757 | chr7 | NT_023603.5 | 42892-192649 | 1 | 1 | ALR/Alpha (1) | |||
| 12 | 145152 | chr6 | NT_167244.1 | 2893340-3038492 | 9 | 7 | L1MC5 (2) | AluJo (2) | (TCC)n (1) | |
| 13 | 120659 | chr6 | NT_167246.1 | 3258603-3379262 | 16 | 11 | L1MC5 (3) | AluSx (3) | MIRb (2) | |
| 14 | 119571 | chr6 | NT_167245.1 | 2605554-2725125 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 116207 | chr6 | NT_167247.1 | 1176735-1292942 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 16 | 112323 | chr6 | NT_167245.1 | 134838-247161 | 7 | 7 | tRNA-Ala-GCY_ (1) | MLT1F (1) | MLT1E2 (1) | |
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 182399 | chr6 | NT_167247.1 | 4414858-4597257 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 179563 | chr6 | NT_167244.1 | 3175897-3355460 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 8 | 166464 | chr6 | NT_167247.1 | 1562631-1729095 | LOC100421582 | tripartite_motif-containing_protein_26 |