| Enzyme: | FauI | Longest uncut segments |
| Specificity: | CCCGC | Repeats in uncut segments |
| Number of sites: | 1412167 | Genes in uncut segments |
| Mean distance between sites: | 2026 base pairs | |
| Standard deviation: | 3707 base pairs | |
| Site density | 493.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 493120 | chr15 | NT_037852.6 | 1398374-1891494 | 0.66 % in | 14 repeats | 0.00 % in | 0 genes |
| 2 | 405701 | chr6 | NT_167244.1 | 2357939-2763640 | 0.46 % in | 8 repeats | 0.00 % in | 0 genes |
| 3 | 219717 | chr6 | NT_167244.1 | 4380334-4600051 | 2.63 % in | 20 repeats | 1.51 % in | 1 genes |
| 4 | 182815 | chr6 | NT_167244.1 | 3790351-3973166 | 1.07 % in | 12 repeats | 0.00 % in | 0 genes |
| 5 | 177774 | chr6 | NT_167248.1 | 521816-699590 | 6.09 % in | 24 repeats | 1.89 % in | 2 genes |
| 6 | 177044 | chrY | NT_011875.12 | 8544935-8721979 | 71.00 % in | 27 repeats | 0.45 % in | 1 genes |
| 7 | 175926 | chr6 | NT_167247.1 | 4419948-4595874 | 1.07 % in | 9 repeats | 100.00 % in | 1 genes |
| 8 | 175751 | chr6 | NT_167244.1 | 3180198-3355949 | 0.22 % in | 4 repeats | 0.02 % in | 1 genes |
| 9 | 169563 | chr6 | NT_167249.1 | 2136321-2305884 | 2.09 % in | 16 repeats | 0.00 % in | 0 genes |
| 10 | 164697 | chr6 | NT_167247.1 | 1562798-1727495 | 0.17 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 156051 | chr6 | NT_167244.1 | 2008440-2164491 | 0.45 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 152523 | chr9 | NT_008470.19 | 21692303-21844826 | 0.71 % in | 6 repeats | 0.00 % in | 0 genes |
| 13 | 144416 | chr6 | NT_167244.1 | 2893104-3037520 | 0.42 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 121208 | chr6 | NT_167244.1 | 437347-558555 | 17.08 % in | 42 repeats | 0.00 % in | 0 genes |
| 15 | 121122 | chr6 | NT_167247.1 | 1171165-1292287 | 4.30 % in | 11 repeats | 0.00 % in | 0 genes |
| 16 | 118883 | chr6 | NT_167245.1 | 2604816-2723699 | 1.11 % in | 3 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 493120 | chr15 | NT_037852.6 | 1398374-1891494 | 14 | 11 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 405701 | chr6 | NT_167244.1 | 2357939-2763640 | 8 | 6 | L4 (2) | AluJb (2) | L1MEg (1) | |
| 3 | 219717 | chr6 | NT_167244.1 | 4380334-4600051 | 20 | 15 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 4 | 182815 | chr6 | NT_167244.1 | 3790351-3973166 | 12 | 10 | MLT1H-int (2) | L2a (2) | (TA)n (1) | |
| 5 | 177774 | chr6 | NT_167248.1 | 521816-699590 | 24 | 17 | AT_rich (5) | L1MA9 (3) | L1MC5 (2) | |
| 6 | 177044 | chrY | NT_011875.12 | 8544935-8721979 | 27 | 13 | LTR12B (9) | L1PA16 (6) | L1PA8 (2) | |
| 7 | 175926 | chr6 | NT_167247.1 | 4419948-4595874 | 9 | 9 | (TTAAA)n (1) | MIR (1) | MER11A (1) | |
| 8 | 175751 | chr6 | NT_167244.1 | 3180198-3355949 | 4 | 4 | GC_rich (1) | Charlie4a (1) | (CCG)n (1) | |
| 9 | 169563 | chr6 | NT_167249.1 | 2136321-2305884 | 16 | 10 | AluSx (4) | L1MB8 (3) | Charlie2b (2) | |
| 10 | 164697 | chr6 | NT_167247.1 | 1562798-1727495 | 2 | 2 | MIR (1) | AluSq (1) | ||
| 11 | 156051 | chr6 | NT_167244.1 | 2008440-2164491 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 12 | 152523 | chr9 | NT_008470.19 | 21692303-21844826 | 6 | 4 | LTR67B (2) | L2 (2) | MIR3 (1) | |
| 13 | 144416 | chr6 | NT_167244.1 | 2893104-3037520 | 5 | 4 | AluY (2) | (TCC)n (1) | AluSg1 (1) | |
| 14 | 121208 | chr6 | NT_167244.1 | 437347-558555 | 42 | 28 | AT_rich (5) | MLT1A-int (3) | L1MA8 (3) | |
| 15 | 121122 | chr6 | NT_167247.1 | 1171165-1292287 | 11 | 7 | L2 (3) | MIRb (2) | ERV3-16A3_I-int (2) | |
| 16 | 118883 | chr6 | NT_167245.1 | 2604816-2723699 | 3 | 3 | MER5B (1) | MER5A1 (1) | L2a (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 219717 | chr6 | NT_167244.1 | 4380334-4600051 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 177774 | chr6 | NT_167248.1 | 521816-699590 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| 6 | 177044 | chrY | NT_011875.12 | 8544935-8721979 | ZNF884P | |
| 7 | 175926 | chr6 | NT_167247.1 | 4419948-4595874 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 175751 | chr6 | NT_167244.1 | 3180198-3355949 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |