| Enzyme: | XmaI | Longest uncut segments |
| Specificity: | CCCGGG | Repeats in uncut segments |
| Number of sites: | 374643 | Genes in uncut segments |
| Mean distance between sites: | 7637 base pairs | |
| Standard deviation: | 12676 base pairs | |
| Site density | 130.9 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 508114 | chr15 | NT_037852.6 | 1397344-1905458 | 1.37 % in | 37 repeats | 1.96 % in | 1 genes |
| 2 | 474953 | chrY | NT_011875.12 | 8416752-8891705 | 80.54 % in | 264 repeats | 11.58 % in | 3 genes |
| 3 | 409073 | chr6 | NT_167244.1 | 2357702-2766775 | 0.95 % in | 16 repeats | 0.00 % in | 0 genes |
| 4 | 295092 | chrX | NT_011669.17 | 1-295093 | 99.69 % in | 47 repeats | 0.00 % in | 0 genes |
| 5 | 289140 | chr12 | NT_029419.12 | 131094-420234 | 99.41 % in | 61 repeats | 0.00 % in | 0 genes |
| 6 | 262638 | chr2 | NT_022184.15 | 32053961-32316599 | 52.61 % in | 416 repeats | 0.00 % in | 0 genes |
| 7 | 257009 | chr11 | NT_167190.1 | 84421-341430 | 97.50 % in | 82 repeats | 2.33 % in | 1 genes |
| 8 | 253119 | chr10 | NT_033985.7 | 1-253120 | 69.48 % in | 207 repeats | 6.64 % in | 29 genes |
| 9 | 249087 | chr6 | NT_167248.1 | 472378-721465 | 20.22 % in | 123 repeats | 0.00 % in | 0 genes |
| 10 | 246333 | chr10 | NT_030059.13 | 8964943-9211276 | 53.30 % in | 367 repeats | 0.00 % in | 0 genes |
| 11 | 241230 | chr19 | NT_011109.16 | 1-241231 | 99.80 % in | 61 repeats | 0.00 % in | 0 genes |
| 12 | 240349 | chr9 | NT_008470.19 | 5408275-5648624 | 52.12 % in | 383 repeats | 0.00 % in | 0 genes |
| 13 | 237256 | chrY | NT_011875.12 | 5496985-5734241 | 59.63 % in | 420 repeats | 0.00 % in | 0 genes |
| 14 | 234408 | chr6 | NT_007299.13 | 175309-409717 | 58.31 % in | 183 repeats | 0.00 % in | 0 genes |
| 15 | 228860 | chr5 | NT_006576.16 | 45886942-46115802 | 92.87 % in | 108 repeats | 0.00 % in | 0 genes |
| 16 | 225427 | chr11 | NT_009237.18 | 48622203-48847630 | 96.88 % in | 50 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 508114 | chr15 | NT_037852.6 | 1397344-1905458 | 37 | 24 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 474953 | chrY | NT_011875.12 | 8416752-8891705 | 264 | 95 | LTR12B (17) | AT_rich (17) | L1PA16 (11) | |
| 3 | 409073 | chr6 | NT_167244.1 | 2357702-2766775 | 16 | 11 | AluY (3) | LTR84b (2) | L4 (2) | |
| 4 | 295092 | chrX | NT_011669.17 | 1-295093 | 47 | 15 | ALR/Alpha (24) | L1PA3 (4) | L1PA2 (4) | |
| 5 | 289140 | chr12 | NT_029419.12 | 131094-420234 | 61 | 19 | ALR/Alpha (29) | L1PA3 (10) | AluY (3) | |
| 6 | 262638 | chr2 | NT_022184.15 | 32053961-32316599 | 416 | 154 | AT_rich (34) | L2a (17) | AluSx (15) | |
| 7 | 257009 | chr11 | NT_167190.1 | 84421-341430 | 82 | 19 | ALR/Alpha (45) | L1PA4 (6) | L1PA3 (4) | |
| 8 | 253119 | chr10 | NT_033985.7 | 1-253120 | 207 | 43 | ALR/Alpha (21) | HSATII (20) | (GAATG)n (17) | |
| 9 | 249087 | chr6 | NT_167248.1 | 472378-721465 | 123 | 78 | AT_rich (15) | MIR (4) | (TA)n (3) | |
| 10 | 246333 | chr10 | NT_030059.13 | 8964943-9211276 | 367 | 162 | AT_rich (46) | MIR (18) | (TA)n (12) | |
| 11 | 241230 | chr19 | NT_011109.16 | 1-241231 | 61 | 12 | ALR/Alpha (33) | L1PA3 (13) | L1PA4 (3) | |
| 12 | 240349 | chr9 | NT_008470.19 | 5408275-5648624 | 383 | 153 | AT_rich (36) | MIR (18) | MIRb (14) | |
| 13 | 237256 | chrY | NT_011875.12 | 5496985-5734241 | 420 | 162 | AT_rich (33) | AluJo (20) | AluSx (17) | |
| 14 | 234408 | chr6 | NT_007299.13 | 175309-409717 | 183 | 92 | ALR/Alpha (16) | AT_rich (13) | L1PA3 (6) | |
| 15 | 228860 | chr5 | NT_006576.16 | 45886942-46115802 | 108 | 39 | ALR/Alpha (32) | AT_rich (11) | L1PA3 (5) | |
| 16 | 225427 | chr11 | NT_009237.18 | 48622203-48847630 | 50 | 11 | ALR/Alpha (26) | L1PA4 (5) | L1PA2 (4) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 508114 | chr15 | NT_037852.6 | 1397344-1905458 | LOC100418897 | |
| 2 | 474953 | chrY | NT_011875.12 | 8416752-8891705 | ZNF884P | |
| ZNF885P | ||||||
| TTTY10 | testis-specific_transcript,_Y-linked_10_(non-protein_coding) | |||||
| 7 | 257009 | chr11 | NT_167190.1 | 84421-341430 | TRIM48 | tripartite_motif-containing_protein_48 |
| 8 | 253119 | chr10 | NT_033985.7 | 1-253120 | LOC100506968 | |
| LOC100506743 | ||||||
| LOC100506987 | ||||||
| LOC100507020 | hypothetical_protein_LOC100507020 | |||||
| LOC100507045 | ||||||
| LOC100507078 | ||||||
| LOC100507104 | ||||||
| LOC100507129 | ||||||
| LOC100507154 | hypothetical_protein_LOC100507154 | |||||
| LOC100507189 | ||||||
| LOC100507216 | ||||||
| LOC100507234 | ||||||
| LOC100507262 | ||||||
| LOC100507287 | ||||||
| LOC100507320 | ||||||
| LOC100507339 | hypothetical_protein_LOC100507339 | |||||
| LOC100507366 | ||||||
| LOC100507385 | ||||||
| LOC100507409 | ||||||
| LOC100507432 | ||||||
| LOC100507451 | ||||||
| LOC100507471 | ||||||
| LOC100507491 | hypothetical_protein_LOC100507491 | |||||
| LOC100507517 | ||||||
| LOC100507542 | hypothetical_protein_LOC100507542 | |||||
| LOC100507565 | ||||||
| LOC100507597 | ||||||
| LOC100506770 | ||||||
| LOC100507622 | ||||||