| Enzyme: | AmaCSI | Longest uncut segments |
| Specificity: | GCTCCA | Repeats in uncut segments |
| Number of sites: | 1348275 | Genes in uncut segments |
| Mean distance between sites: | 2122 base pairs | |
| Standard deviation: | 2546 base pairs | |
| Site density | 471.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 491187 | chr15 | NT_037852.6 | 1395482-1886669 | 0.23 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 404865 | chr6 | NT_167244.1 | 2358096-2762961 | 0.42 % in | 8 repeats | 0.00 % in | 0 genes |
| 3 | 214244 | chr6 | NT_167244.1 | 4389555-4603799 | 2.46 % in | 15 repeats | 0.00 % in | 0 genes |
| 4 | 184409 | chr6 | NT_167244.1 | 3787420-3971829 | 1.10 % in | 10 repeats | 0.04 % in | 1 genes |
| 5 | 176974 | chr6 | NT_167244.1 | 3179290-3356264 | 0.26 % in | 6 repeats | 0.57 % in | 2 genes |
| 6 | 173584 | chr6 | NT_167247.1 | 4421787-4595371 | 0.64 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 167382 | chr6 | NT_167249.1 | 2137883-2305265 | 1.06 % in | 9 repeats | 0.00 % in | 0 genes |
| 8 | 166451 | chr6 | NT_167247.1 | 1562611-1729062 | 0.54 % in | 6 repeats | 0.20 % in | 1 genes |
| 9 | 161259 | chr6 | NT_167248.1 | 520069-681328 | 1.21 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 159555 | chr6 | NT_167244.1 | 2009420-2168975 | 0.79 % in | 6 repeats | 0.00 % in | 0 genes |
| 11 | 151831 | chr6 | NT_167244.1 | 2893726-3045557 | 2.26 % in | 21 repeats | 0.00 % in | 0 genes |
| 12 | 150903 | chr9 | NT_008470.19 | 21692461-21843364 | 0.44 % in | 2 repeats | 0.00 % in | 0 genes |
| 13 | 118812 | chr6 | NT_167245.1 | 2605936-2724748 | 1.07 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 116919 | chr6 | NT_167246.1 | 3258580-3375499 | 0.56 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 115925 | chr6 | NT_167247.1 | 1176628-1292553 | 0.89 % in | 1 repeats | 0.00 % in | 0 genes |
| 16 | 113934 | chr7 | NT_007933.15 | 68177579-68291513 | 4.58 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 491187 | chr15 | NT_037852.6 | 1395482-1886669 | 7 | 7 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 404865 | chr6 | NT_167244.1 | 2358096-2762961 | 8 | 6 | L4 (2) | AluJb (2) | L1MEg (1) | |
| 3 | 214244 | chr6 | NT_167244.1 | 4389555-4603799 | 15 | 11 | HERVH-int (3) | AluSx (2) | AluSg/x (2) | |
| 4 | 184409 | chr6 | NT_167244.1 | 3787420-3971829 | 10 | 9 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 176974 | chr6 | NT_167244.1 | 3179290-3356264 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 173584 | chr6 | NT_167247.1 | 4421787-4595371 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 167382 | chr6 | NT_167249.1 | 2137883-2305265 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 8 | 166451 | chr6 | NT_167247.1 | 1562611-1729062 | 6 | 4 | MIR (2) | L1MEe (2) | (GGAA)n (1) | |
| 9 | 161259 | chr6 | NT_167248.1 | 520069-681328 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 159555 | chr6 | NT_167244.1 | 2009420-2168975 | 6 | 6 | MIR (1) | MER5A1 (1) | L2 (1) | |
| 11 | 151831 | chr6 | NT_167244.1 | 2893726-3045557 | 21 | 10 | L1MC5 (6) | L2c (3) | AluSc (3) | |
| 12 | 150903 | chr9 | NT_008470.19 | 21692461-21843364 | 2 | 2 | LTR67B (1) | L1M5 (1) | ||
| 13 | 118812 | chr6 | NT_167245.1 | 2605936-2724748 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 14 | 116919 | chr6 | NT_167246.1 | 3258580-3375499 | 4 | 3 | MIRb (2) | MIR3 (1) | AluSx (1) | |
| 15 | 115925 | chr6 | NT_167247.1 | 1176628-1292553 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 16 | 113934 | chr7 | NT_007933.15 | 68177579-68291513 | 16 | 12 | L1PB1 (3) | L1MB7 (2) | AluSx (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 184409 | chr6 | NT_167244.1 | 3787420-3971829 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 176974 | chr6 | NT_167244.1 | 3179290-3356264 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 173584 | chr6 | NT_167247.1 | 4421787-4595371 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166451 | chr6 | NT_167247.1 | 1562611-1729062 | LOC100421582 | tripartite_motif-containing_protein_26 |